TRON Bioinformatics
- 86 followers
- Mainz, Germany
- http://tron-mainz.de/
Popular repositories Loading
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tronflow-mutect2
tronflow-mutect2 PublicNextflow pipeline for Mutect2 somatic variant calling best practices
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covigator-ngs-pipeline
covigator-ngs-pipeline PublicA Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
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splice2neo
splice2neo PublicR package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
Repositories
- qualibam Public
A Nextflow pipeline built in nf-core style for comprehensive BAM file quality control, supporting both DNA and RNA sequencing input. Integrates RustQC, RNA-SeQC, Qualimap BAM QC, somalier, and alfred to provide multi-dimensional QC metrics covering read quality, alignment statistics, RNA-seq-specific measures, and sample identity verification.
TRON-Bioinformatics/qualibam’s past year of commit activity - snakemake-workflow-catalog Public Forked from snakemake/snakemake-workflow-catalog
A statically generated catalog of available Snakemake workflows
TRON-Bioinformatics/snakemake-workflow-catalog’s past year of commit activity - tronmake-kmer-pipeline Public
A Snakemake pipeline to build and query large scale k-mer datastructures
TRON-Bioinformatics/tronmake-kmer-pipeline’s past year of commit activity - k4neo Public
k4neo enables easy screening of target sequences against a sequence database generated from a set of defined control samples. This packages handles index generation and annotation of targets with information about expression in healthy and cancer tissue samples.
TRON-Bioinformatics/k4neo’s past year of commit activity - test-datasets Public Forked from nf-core/test-datasets
Test data to be used for automated testing with the nf-core pipelines
TRON-Bioinformatics/test-datasets’s past year of commit activity - splice2neo Public
R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
TRON-Bioinformatics/splice2neo’s past year of commit activity
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