BED file with local purities not properly recorded in VCF header #35
Description
header looks like this right now
##vafator_command_line={"name": "vafator", "version": "2.0.1", "date": "Fri Aug 12 12:16:53 2022", "timestamp": 1660299413.784177, "input_vcf": "/home/priesgo/src/github/tronflow-variant-normalization/work/8b/b9e1d3830b4ed1f35ca30c33bfc941/test_tumor_normal.vcf", "output_vcf": "/home/priesgo/src/github/tronflow-variant-normalization/work/8b/b9e1d3830b4ed1f35ca30c33bfc941/tumor_normal.vaf.vcf", "bams": "primary:/home/priesgo/src/github/tronflow-variant-normalization/test/data/TESTX_S1_L001.bam;normal:/home/priesgo/src/github/tronflow-variant-normalization/test/data/TESTX_S1_L002.bam", "mapping_quality_threshold": 0, "base_call_quality_threshold": 0, "purities": "primary:0.5;normal:0.6", "normal_ploidy": 2, "tumor_ploidy": "primary:<vafator.ploidies.PloidyManager object at 0x7f0528d71580>;normal:<vafator.ploidies.PloidyManager object at 0x7f0528d5ffa0>"}