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Example3: Visulizing HiC matrixes
Ming Gu edited this page Sep 19, 2023
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DiffDomain also provides visualization function to visualize Hi-C matrices side-by-side.
- Usage: scriptname visualization <chr> <start> <end> <hic0> <hic1> [options]
python diffdomain/diffdomains.py visualization 1 163500000 165000000 \
data/single-TAD/GM12878_chr1_163500000_165000000_res_10k.txt \
data/single-TAD/K562_chr1_163500000_165000000_res_10k.txt \
--reso 10000 --ofile res/images/side_by_side
Figure is saved in <res/images/>.
DiffDomain~Wiki