Update dev instructions

[paskino]

Description

Updates instructions on local build of CIL.

• Check Update documentation build instructions to include windows #2251

Example Usage

Contribution Notes

• The content of this Pull Request (the Contribution) is intentionally submitted for inclusion in CIL (the Work) under the terms and conditions of the Apache-2.0 License
• I confirm that the contribution does not violate any intellectual property rights of third parties

Changes

• README.md
• Updates the build script as locally I noticed that IPP was not found unless -Ccmake.define.IPP_ROOT=$CONDA_PREFIX was passed
• Created environment files:
  • Development envs scripts#9

Testing you performed

Please add any demo scripts to https://github.com/TomographicImaging/CIL-Demos/tree/main/misc

Local build on:

• Linux
• mac ARM
• Windows

On Linux a total of 43 tests are skipped:

test_aqdata_full_tigre (test_DataProcessor.TestBinner.test_aqdata_full_tigre) 
test_pad_id_full_tigre (test_DataProcessor.TestPadder.test_pad_id_full_tigre) 
test_aqdata_full_tigre (test_DataProcessor.TestSlicer.test_aqdata_full_tigre) 
test_linearity (test_PluginsTigre_Siddon.Test_Parallel2D_Projectors_toy_tigre.test_linearity) TIGRE backprojector weights bug
test_norm (test_PluginsTigre_Siddon.Test_Parallel2D_Projectors_toy_tigre.test_norm) TIGRE backprojector weights bug
test_linearity (test_PluginsTigre_Siddon.Test_Parallel3D_Projectors_toy_tigre.test_linearity) TIGRE backprojector weights bug
test_norm (test_PluginsTigre_Siddon.Test_Parallel3D_Projectors_toy_tigre.test_norm) TIGRE backprojector weights bug
test_linearity (test_PluginsTigre_interpolated.Test_Parallel2D_Projectors_toy_tigre.test_linearity) TIGRE backprojector weights bug
test_norm (test_PluginsTigre_interpolated.Test_Parallel2D_Projectors_toy_tigre.test_norm) TIGRE backprojector weights bug
test_linearity (test_PluginsTigre_interpolated.Test_Parallel3D_Projectors_toy_tigre.test_linearity) TIGRE backprojector weights bug
test_norm (test_PluginsTigre_interpolated.Test_Parallel3D_Projectors_toy_tigre.test_norm) TIGRE backprojector weights bug
test_geometry_gpu (test_io.TestZeissDataReader.test_geometry_gpu) Missing prerequisites: has_file False, has_olefile True has_dxchange True
test_import_error (test_io.TestZeissDataReader.test_import_error) This unit test runs only if dxchange is not installed: has_dxchange True
test_read_and_reconstruct_2D_gpu (test_io.TestZeissDataReader.test_read_and_reconstruct_2D_gpu) Missing prerequisites: has_file False, has_olefile True has_dxchange True, has_astra True has_wget True
test_read_txm_recon_file_gpu (test_io.TestZeissDataReader.test_read_txm_recon_file_gpu) Missing prerequisites: has_file False, has_recon_file False has_olefile True has_dxchange True, has_astra True has_wget True

Plus these which test compatibility with SIRF (which is not installed)

test_TNV_call_works (test_SIRF.TestPETRegularisation.test_TNV_call_works) TNV not implemented for 2D
test_TNV_proximal_works (test_SIRF.TestPETRegularisation.test_TNV_proximal_works) TNV not implemented for 2D
test_SIRF_CIL_MLEM (test_SIRF.TestCILSIRFPrecond.test_SIRF_CIL_MLEM) Skipping as SIRF is not available
test_Gradient (test_SIRF.TestGradientMR_2D.test_Gradient) Skipping as SIRF is not available
test_TVdenoisingMR (test_SIRF.TestGradientMR_2D.test_TVdenoisingMR) Has SIRF
test_Gradient (test_SIRF.TestGradientPET_2D.test_Gradient) Skipping as SIRF is not available
test_Gradient (test_SIRF.TestGradientPET_3D.test_Gradient) Skipping as SIRF is not available
test_FGP_TV_call_works (test_SIRF.TestMRRegularisation.test_FGP_TV_call_works) Has SIRF and CCPi Regularisation
test_FGP_TV_proximal_works (test_SIRF.TestMRRegularisation.test_FGP_TV_proximal_works) Has SIRF and CCPi Regularisation
test_TGV_call_works (test_SIRF.TestMRRegularisation.test_TGV_call_works) Has SIRF and CCPi Regularisation
test_TGV_proximal_works (test_SIRF.TestMRRegularisation.test_TGV_proximal_works) Has SIRF and CCPi Regularisation
test_TNV_call_works (test_SIRF.TestMRRegularisation.test_TNV_call_works) Has SIRF and CCPi Regularisation
test_TNV_proximal_works (test_SIRF.TestMRRegularisation.test_TNV_proximal_works) Has SIRF and CCPi Regularisation
test_FGP_TV_call_works (test_SIRF.TestPETRegularisation.test_FGP_TV_call_works) Has SIRF and CCPi Regularisation
test_FGP_TV_proximal_works (test_SIRF.TestPETRegularisation.test_FGP_TV_proximal_works) Has SIRF and CCPi Regularisation
test_TGV_call_works (test_SIRF.TestPETRegularisation.test_TGV_call_works) Has SIRF and CCPi Regularisation
test_TGV_proximal_works (test_SIRF.TestPETRegularisation.test_TGV_proximal_works) Has SIRF and CCPi Regularisation
test_FGP_TV_call_works (test_SIRF.TestRegRegularisation.test_FGP_TV_call_works) Has SIRF and CCPi Regularisation
test_FGP_TV_proximal_works (test_SIRF.TestRegRegularisation.test_FGP_TV_proximal_works) Has SIRF and CCPi Regularisation
test_TGV_call_works (test_SIRF.TestRegRegularisation.test_TGV_call_works) Has SIRF and CCPi Regularisation
test_TGV_proximal_works (test_SIRF.TestRegRegularisation.test_TGV_proximal_works) Has SIRF and CCPi Regularisation
test_TNV_call_works (test_SIRF.TestRegRegularisation.test_TNV_call_works) Has SIRF and CCPi Regularisation
test_TNV_proximal_works (test_SIRF.TestRegRegularisation.test_TNV_proximal_works) Has SIRF and CCPi Regularisation
test_BlockDataContainer_with_SIRF_DataContainer_add (test_SIRF.TestSIRFCILIntegration.test_BlockDataContainer_with_SIRF_DataContainer_add) Has SIRF
test_BlockDataContainer_with_SIRF_DataContainer_divide (test_SIRF.TestSIRFCILIntegration.test_BlockDataContainer_with_SIRF_DataContainer_divide) Has SIRF
test_BlockDataContainer_with_SIRF_DataContainer_multiply (test_SIRF.TestSIRFCILIntegration.test_BlockDataContainer_with_SIRF_DataContainer_multiply) Has SIRF
test_BlockDataContainer_with_SIRF_DataContainer_subtract (test_SIRF.TestSIRFCILIntegration.test_BlockDataContainer_with_SIRF_DataContainer_subtract) Has SIRF

Related issues/links

Checklist

• I have performed a self-review of my code
• I have added docstrings in line with the guidance in the developer guide
• I have updated the relevant documentation
• I have implemented unit tests that cover any new or modified functionality
• CHANGELOG.md has been updated with any functionality change
• Request review from all relevant developers