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Improve graph library #219

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@sunxd3 sunxd3 commented Oct 4, 2024

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sunxd3 and others added 9 commits September 30, 2024 09:52
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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github-actions bot commented Oct 4, 2024

BridgeStan not found at location specified by $BRIDGESTAN environment variable, downloading version 2.5.0 to /home/runner/.bridgestan/bridgestan-2.5.0
Done!
Model dogs produces error: ErrorException("log_density() failed with exception: Exception: bernoulli_lpmf: Probability parameter is inf, but must be in the interval [0, 1] (in '/home/runner/work/JuliaBUGS.jl/JuliaBUGS.jl/benchmark/stan-example-models/bugs_examples/vol1/dogs/dogs.stan', line 37, column 6 to line 38, column 62)\n")

Model Parameter Count Data Count Stan Density Time (µs) Stan Density Gradient Time (µs) JuliaBUGS Density Time with Graph Walk (µs) JuliaBUGS Density Gradient Time with ReverseDiff.jl(compiled tape) (µs)
rats 65 150 5.5564 8.29533 8004.29 91.1555
pumps 12 10 1.02118 1.34159 178.744 6.9805
dogs 2 720 NA NA 3141.5 197.279
seeds 26 21 2.43818 3.098 716.91 20.469
surgical_realistic 14 12 1.28674 1.68376 242.479 9.037
magnesium 108 96 10.64 12.388 11064.5 89.667
salm 22 18 2.38867 3.15033 539.879 13.7305
equiv 15 20 2.47383 3.40013 429.633 16.26
dyes 9 30 1.01439 1.35709 274.934 13.595
stacks 6 21 1.15136 1.70318 336.799 14.6925
epil 303 236 32.982 39.043 76797.7 279.137
blockers 47 44 3.23711 3.89225 2178.15 36.938
oxford 244 240 16.28 20.539 53727.8 213.8
lsat 1006 5000 182.04 220.142 3.37605e6 1652.19
bones 33 422 72.255 89.9435 13136.6 209.411
mice 20 65 7.37625 9.45433 1105.51 47.178
kidney 64 58 10.745 16.451 4002.55 77.795
leuk 18 714 20.629 26.821 10112.0 205.695
leukfr 40 714 23.574 31.829 20502.9 254.65

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