BBSR Omics Radar

Static site located at:

https://uccc-bbsr.github.io/omics-radar/index.html

A local Streamlit editorial application and static newsletter publisher for the University of Colorado Cancer Center Biostatistics and Bioinformatics Shared Resource.

Run locally

uv sync
uv run streamlit run app.py

The app creates its local database at data/omics_radar.duckdb. The database is pushed to GitHub. Database could be split in the future if it gets too big. Add and manage entries locally, then publish an issue to write the public site to docs/.

Test

uv run pytest

Sources list:

• Bioinformatics (Springer)
• Bioinformatics Blogs Aggregator
• Genome Biology
• Ming Tang Blog
• Nature Methods - Comp Bio
• PLOS Computational Biology
• Planet Python
• Posit Open Source Blog
• Python Bytes Podcast
• R Bloggers
• RNA-seq Blog
• bioRxiv Bioinformatics

See implementation.md for the architecture, data model, workflow, and roadmap.