Revert to est_seroincidence_by()

[kristinawlai]

Update estimate_scr --> est_seroincidence_by()

[codecov]

❌ 12 Tests Failed:

Tests completed	Failed	Passed	Skipped
81	12	69	0

View the top 3 failed test(s) by shortest run time

est_seroincidence_by::results_are_consistent_with_strata_NULL_

Stack Traces | 0.022s run time

Error in `estimate_scr(pop_data = sees_pop_data_pk_100, sr_params = typhoid_curves_nostrat_100, 
    noise_param = example_noise_params_pk, antigen_isos = c("HlyE_IgG", 
        "HlyE_IgA"))`: could not find function "estimate_scr"

print.seroincidence::results_are_consistent

Stack Traces | 0.033s run time

Error in `estimate_scr(pop_data = xs_data, sr_params = curve, noise_params = noise, 
    antigen_isos = c("HlyE_IgG", "HlyE_IgA"), )`: could not find function "estimate_scr"

est_seroincidence_by::a_warning_is_produced_when_strata_NULL

Stack Traces | 0.049s run time

Error in `estimate_scr(pop_data = pop_data, sr_params = curve_params, noise_params = noise_params, 
    lambda_start = lambda_start, antigen_isos = antigen_isos, 
    build_graph = build_graph, verbose = verbose, ...)`: could not find function "estimate_scr"
Backtrace:
    x
 1. \-testthat::expect_snapshot(...) at test-est_seroincidence_by.R:244:5
 2.   \-rlang::cnd_signal(state$error)

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[github-actions]

📕 Preview documentation for this PR has been cleaned up.

[kristinawlai]

Stuck with these failed tests (8 of these):

Ran into a similar issue in PR 432 (rename estimate_scr() to est_seroincidence()) with parallel processing, but seems to be something different here. PR 432 fixed by reverting to "what = estimate_scr" in this commit: 45e5436

[kristinawlai]

Moved to new branch