Test sim kwan em edits

[d-morrison]

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[Copilot]

Pull Request Overview

This pull request adds new simulation scripts (in both .qmd and .r formats) to run seroincidence simulations with different configurations (renew_params TRUE and FALSE) and generates summary statistics tables for PDF output.

• Added new simulation notebooks and R scripts for simulation runs
• Updated export statements in R files and NAMESPACE to include sim.cs and sim.cs.multi
• Adjusted .gitignore to ignore generated PDF files

Reviewed Changes

Copilot reviewed 7 out of 7 changed files in this pull request and generated 2 comments.

Show a summary per file

File	Description
data-raw/test_sim_020425_2.qmd	Adds a new simulation notebook for renew_params=TRUE and builds summaries
data-raw/test_sim_020425.r	New simulation script with multiple sample sizes and lambda scenarios
data-raw/test_sim_020425.qmd	Similar simulation notebook with summary statistics and PDF table output
data-raw/.gitignore	Updated to ignore PDF files
R/sim_pop_data_multi.R	Updated export for sim.cs.multi
R/sim_pop_data.R	Updated export for sim.cs
NAMESPACE	Updated to export sim.cs and sim.cs.multi

[Copilot]

The sample size parameter for final_table_150 is set to 100, but it should likely be 150 to match the intended sample size.

Suggested change

	final_table_150 <- generate_final_table(results_150, 100)
	final_table_150 <- generate_final_table(results_150, 150)

[Copilot]

The sample size parameter for final_table_200 is set to 100, but it should likely be 200 to accurately reflect the simulation conditions.

Suggested change

	final_table_200 <- generate_final_table(results_200, 100)
	final_table_200 <- generate_final_table(results_200, 200)

[codecov]

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❌ 1 Tests Failed:

Tests completed	Failed	Passed	Skipped
85	1	84	0

View the top 1 failed test(s) by shortest run time

sim_pop_data_multi::_sim_pop_data_multi_works_consistently

Stack Traces | 18.4s run time

Snapshot of `path` to 'sim_pop_data_multi/pop_data_multi.csv' has changed
Run `testthat::snapshot_review('sim_pop_data_multi/')` to review changes
Backtrace:
    x
 1. \-ssdtools:::expect_snapshot_data(pop_data_multi, name = "pop_data_multi") at test-sim_pop_data_multi.R:40:3
 2.   \-testthat::expect_snapshot_file(path, paste0(name, ".csv"), compare = testthat::compare_file_text)

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[github-actions]

📕 Preview documentation for this PR has been cleaned up.