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Make subjects.txt optional#30

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p-j-smith merged 3 commits intomainfrom
paul/all-subjects
Jan 27, 2025
Merged

Make subjects.txt optional#30
p-j-smith merged 3 commits intomainfrom
paul/all-subjects

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Fixes #20

  • Make it easier to target a specific subject or subset of patients
    • default to running the analysis on all subjects
    • take an optional argument -s to define the list of subjects to target
    • take an optional argument -f to define the path to a file containing the list of subjects to target (relative to the mounted data directory)
    • if both -s and -f and passed, the subjects from each are combined and duplicates removed
  • update docs to reflect changes

Add optional arguments '-s' and '-f' for specifying a list of subjects and a file containing subjects respectively
@p-j-smith p-j-smith merged commit 23e4ea4 into main Jan 27, 2025
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@p-j-smith p-j-smith deleted the paul/all-subjects branch January 27, 2025 13:52
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Make subjects.txt optional

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