MPTM: A Tool for Mining Protein Post-translational Modifications from Literature
MPTMDB: http://bioinformatics.ustc.edu.cn/mptm/download.html
MPTM relies on several third-party tools that have to be obtained prior to running server.
Stanford Parser -- A statistical parser Webpage: http://nlp.stanford.edu/software/lex-parser.shtml
LingPipe Webpage: http://alias-i.com/lingpipe/ LingPipe is tool kit for processing text using computational linguistics. LingPipe is used to do tasks like: (1)Find the names of people, organizations or locations in news (2)Automatically classify Twitter search results into categories (3)Suggest correct spellings of queries
BANNER： BANNER is an open-source, executable survey of advances in biomedical named entity recognition, and intended to serve as a benchmark for the text mining field. Please download the source code of BANNER from http://banner.cvs.sourceforge.net /banner/ and compile the code into a jar package by Apache Ant tool.