Fix Docker build

.dockerignore

@@ -1 +1,5 @@
+.yarn/cache
+.yarn/unplugged
+.yarn/install-state.gz
 node_modules
+.pnp.*

.env.example

@@ -9,3 +9,8 @@ ELEVATION_DATABASE=<database_url>
 ALICE_DATABASE=<database_url>
 ROCKD_DATABASE=<database_url>
 WHOS_ON_FIRST_DATABASE=<database_url>
+
+# Settings for debugging
+NODE_ENV=development
+DEBUG=*
+PORT=5002

.gitignore

@@ -28,5 +28,9 @@ Icon
 .Spotlight-V100
 .Trashes
 .yarn/install-state.gz
+.yarn/cache
+.yarn/unplugged
 
 .env
+.pnp.*
+

.prettierignore

@@ -1,2 +1,3 @@
 .yarn
 node_modules
+.pnp.*

.yarnrc.yml

@@ -1,3 +1 @@
-nodeLinker: node-modules
-
 yarnPath: .yarn/releases/yarn-4.9.1.cjs

Dockerfile

@@ -8,18 +8,11 @@ RUN apt-get -y update && \
 
 WORKDIR /code
 
-COPY ./package.json ./yarn.lock ./code/
+COPY package.json yarn.lock .yarnrc.yml /code/
+COPY .yarn/releases /code/.yarn/releases
 
 RUN yarn install
 
-# We had to switch to native postgres bindings
-# (using the pg-native module) for the purposes
-# of building in Docker. I think this is necessary
-# to support Postgres v14, but it will make things harder
-# to build/run on weird platforms.
-# https://github.com/brianc/node-postgres/issues/1508
-ENV NODE_PG_FORCE_NATIVE=1
-
 COPY ./ /code/
 
 COPY ./supervisor/api.conf /etc/supervisor/conf.d/

package.json

@@ -1,6 +1,6 @@
 {
   "name": "@macrostrat/api-v2",
-  "version": "2.1.0-beta.1",
+  "version": "2.1.0-beta.2",
   "description": "An API for stratigraphic and geological information (Version 2).",
   "main": "server.js",
   "repository": {
@@ -53,18 +53,18 @@
     "geojson-precision": "^0.4.0",
     "image-size": "^0.5.0",
     "mapshaper": "^0.3.20",
-    "memory-cache": "^0.1.4",
+    "memory-cache": "^0.2.0",
     "microtime": "^3.0.0",
     "multiline": "^1.0.2",
-    "mysql": "2.7.x",
-    "pg": "^8.7.1",
-    "pg-native": "^3.0.0",
+    "pg": "^8.15.6",
+    "pg-native": "^3.4.5",
     "portscanner": "^1.0.0",
     "redis": "^2.4.2",
     "tilestrata": "^2.0.1",
     "tilestrata-dependency": "^0.4.0",
     "topojson": "^1.6.19",
     "ts-node": "^10.9.2",
+    "tsx": "^4.19.3",
     "turf-area": "^1.1.1",
     "turf-buffer": "^1.0.4",
     "turf-point": "^0.1.6",

server.ts

@@ -1,3 +1,9 @@
+const dotenv = require("dotenv");
+// Load environment variables from .env file
+dotenv.config();
+
+console.log(process.env.PORT)
+
 var express = require("express"),
   bodyParser = require("body-parser"),
   //v1 = require("./v1"),
@@ -61,7 +67,7 @@ app.use("/", v2);
 app.set("json spaces", 2);
 
 //TODO: update port to designated env.
-app.port = process.argv[2] || 5000;
+app.port = process.argv[2] ?? process.env.PORT ?? 5000;
 
 app.start = function () {
   app.listen(app.port, function () {

supervisor/api.conf

@@ -1,5 +1,7 @@
 [program:api]
-command = npm start
+directory = /code
+user = root
+command = yarn start 5000
 autorestart = true
 stdout_logfile = /dev/stdout
 stdout_logfile_maxbytes = 0

v2/credentials.ts

@@ -1,7 +1,3 @@
-const dotenv = require("dotenv");
-// Load environment variables from .env file
-dotenv.config();
-
 // Set up debug mode if needed
 exports.debug = process.env.NODE_ENV === "development";
 if (exports.debug) {

v2/larkin.ts

@@ -667,7 +667,7 @@ const { Client, Pool } = require("pg");
   // Check if Redis is available
   portscanner.checkPortStatus(6379, "127.0.0.1", function (error, status) {
     if (status === "open") {
-      larkin.trace("Using Redis cache for columns");
+      larkin.log("Using Redis cache for columns");
       var redis = require("redis");
       larkin.cache = redis.createClient(6379, "127.0.0.1");
       larkin.cache.fetch = function (key, callback) {
@@ -676,12 +676,13 @@ const { Client, Pool } = require("pg");
         });
       };
     } else {
-      larkin.trace("Using application cache for columns");
+      larkin.log("Using memory cache for columns");
       larkin.cache = require("memory-cache");
       larkin.cache.fetch = function (key, callback) {
         callback(larkin.cache.get(key));
       };
     }
+    console.log("Initialized cache")
   });
 
   /*
@@ -701,7 +702,7 @@ const { Client, Pool } = require("pg");
           //get all units and summarize for columns
           http.get(
             //TODO: change url to match env.
-            "http://localhost:5000/v2/units?all&response=long",
+            "http://0.0.0.0:5000/v2/units?all&response=long",
             function (res) {
               var body = "";
               res.on("data", function (chunk) {
@@ -888,6 +889,7 @@ const { Client, Pool } = require("pg");
             JSON.stringify(results.columnsNoGeom),
           );
         } else {
+          larkin.trace("Setting up column cache")
           larkin.cache.put("unitSummary", results.unitSummary);
           larkin.cache.put("columnsGeom", results.columnsGeom);
           larkin.cache.put("columnsNoGeom", results.columnsNoGeom);