Taiji_ALTRA

Integrative single cell analysis with Taiji framework, featuring:

• preprocessing of single cell RNA-seq and ATAC-seq
  • prepare Taiji input file
  • prepare Taiji config file
  • run Taiji
• co-embedding of single cell RNA-seq and ATAC-seq
• signature identification with unsupervised Kmeans clustering
• cellular communication network analysis
  • run cellchat for individual
  • ccc combined analysis
• pathogenic gene expression
• binary classification model

Taiji ALTRA workflow

Resources

• data explorer
• talk at ACR meeting

How to cite

preprint