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1. Phylogenetic-Occupancy-Model Phylogenetic-Occupancy-Model Public

   A statistical model for incomplete genomic presence/absence data

   Python 1

2. Smc-CAT Smc-CAT Public

   Sequential Monte Carlo Sampling for the CAT Model

   C++

3. OmegaSwitch OmegaSwitch Public

   Bayesian phylogenetic model for detecting changes in latent evolutionary regimes

   C++

4. B3 B3 Public

   The Bayesian Battleship Benchmark: Evaluating LLM Sequential Decision Making

   Python