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Remove unused dependencies #76

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Merged
canergen merged 2 commits into from
Feb 6, 2025
Merged

Remove unused dependencies #76

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0fda844
Update pyproject.toml
canergen Feb 6, 2025
45ace2c
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Feb 6, 2025
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2 changes: 1 addition & 1 deletion .github/workflows/release_notes.md
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Expand Up @@ -6,4 +6,4 @@ This release is available via PyPi:
pip install popv
```

Please report any issues on [GitHub](https://github.com/yoseflab/popv).
Please report any issues on [GitHub](https://github.com/yoseflab/popv).
2 changes: 1 addition & 1 deletion Dockerfile
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Expand Up @@ -15,4 +15,4 @@ ENV POPV_PATH="/usr/local/lib/python3.11/site-packages/popv"
COPY . ${POPV_PATH}

ARG DEPENDENCIES=""
RUN uv pip install --system "popv[${DEPENDENCIES}] @ ${POPV_PATH}"
RUN uv pip install --system "popv[${DEPENDENCIES}] @ ${POPV_PATH}"
2 changes: 0 additions & 2 deletions pyproject.toml
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Expand Up @@ -41,13 +41,11 @@ dependencies = [
"anndata",
"bbknn",
"celltypist",
"faiss-cpu",
"huggingface-hub",
"onclass",
"scanorama",
"scanpy",
"scikit-misc",
"sklearn-ann",
"scvi-tools",
"tensorflow",
"harmony-pytorch",
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