Update template to v0.6.0

[scverse-bot]

cookiecutter-scverse released v0.6.0.

Changes

CI updates

We now more consistently embrace hatch and uv in the template. CI now generates the job matrix from that hatch configuration. This means the pyproject.toml file is now the one single point of truth for both local and CI test jobs.

• Get test matrix from hatch by @grst in Get test matrix from hatch scverse/cookiecutter-scverse#390
• Enable parallel testing with hatch by @grst in Enable parallel testing with hatch scverse/cookiecutter-scverse#430
• chore: update code cov by @ilan-gold in chore: update code cov scverse/cookiecutter-scverse#427
• Fix remaining uv cache globs in workflows by @flying-sheep in Fix remaining uv cache globs in workflows scverse/cookiecutter-scverse#388
• Switch root tests to uv by @flying-sheep in Switch root tests to uv scverse/cookiecutter-scverse#384
• Fix uv cache glob for script tests by @flying-sheep in Fix uv cache glob for script tests scverse/cookiecutter-scverse#387
• Test pre-release dependencies by @grst in Test pre-release dependencies scverse/cookiecutter-scverse#393
• Use hatch on RTD by @grst in Use hatch on RTD scverse/cookiecutter-scverse#402
• Fix ruff-check naming by @Zethson in Fix ruff-check naming scverse/cookiecutter-scverse#414
• fix codecov upload (closes #381) by @ilia-kats in fix codecov upload (closes #381) scverse/cookiecutter-scverse#382

Documentation updates

We improved the "contributing guide" that is also synced into the repos using this template to recommend hatch
as the default project manager.

• Fix repo migration commands by @le-ander in Fix repo migration commands scverse/cookiecutter-scverse#380
• Delete docs/Makefile by @grst in Delete docs/Makefile scverse/cookiecutter-scverse#383
• restore missing links by @Zethson in restore missing links scverse/cookiecutter-scverse#411
• Update documentation by @grst in Update documentation scverse/cookiecutter-scverse#406

Chore

• Update pre-commit config
• Re-enable dry-run for release by @grst in Re-enable dry-run for release scverse/cookiecutter-scverse#394
• Create template sync PRs from versioned branch by @grst in Create template sync PRs from versioned branch scverse/cookiecutter-scverse#401

Full Changelog: scverse/cookiecutter-scverse@v0.5.0...v0.6.0

Additional remarks

• unsubscribe: If you don’t want to receive these PRs in the future,
  add skip: true to template-repos.yml using a PR or,
  if you never want to sync from the template again, delete the .cruft.json file in the root of your repository.
• If there are merge conflicts, you need to resolve them manually.
• The scverse template works best when the pre-commit.ci, readthedocs and codecov services are enabled.
  Make sure to activate those apps if you haven't already.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
⚠️ Please upload report for BASE (main@482ea4b). Learn more about missing BASE report.
⚠️ Report is 70 commits behind head on main.

Additional details and impacted files

@@           Coverage Diff           @@
##             main      #61   +/-   ##
=======================================
  Coverage        ?   92.69%           
=======================================
  Files           ?        7           
  Lines           ?      643           
  Branches        ?        0           
=======================================
  Hits            ?      596           
  Misses          ?       47           
  Partials        ?        0           

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.