Introduction

TsImpute is developed to impute dropouts of scRNA-seq data in a two-step manner and improve down-stream analysis such as cell clustering, differential expression analysis, etc.

Instruction

Users can just take three steps to use tsImpute:

1. Download tsImpute_0.1.1.tar.gz;
2. Download the example data darmanis.rds and corresponding labels cell_types.rds;
3. Run the script example.R.

Data availability

Darmanis: source

Ting: source

Pollen: source

Huarte: source

PBMC: source

Klein: source

Baron: source

Domingo: source

Chu: source