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aa9gj/README.md

Typing SVG

👋 I'm Arby!

Computational Biologist | Multi-Omics Expert | Machine Learning & Clinical Data Analyst

Skills & Tools

  • Multi-omics: Transcriptomics (scRNAseq, bulk RNAseq, AS, eQTL, sQTL), Methylation (WGBS, mQTL), DNAseq (Low-Pass Sequencing, genotyping arrays), Systems (Bayesian colocalization, GWAS)
  • Programming: R, Python, bash, SQL
  • Machine Learning: scikit-learn, PyTorch, XGBoost, hugging-face
  • Build RAGs for biological data: LangChain, Qdrant, LangGraph, RAGAS

Let's Connect

LinkedIn
Website
Email: arby.a.abood@gmail.com

Pinned Loading

  1. Technical-Portfolio-Case-Studies Technical-Portfolio-Case-Studies Public

  2. Bone_proteogenomics_manuscript Bone_proteogenomics_manuscript Public

    Code accompanying the manuscript

    R

  3. bulk-rnaseq-nf bulk-rnaseq-nf Public

    Basic pipeline using Nextflow to automate bulk RNAseq data preprocessing

    Nextflow

  4. GWASTargetChase GWASTargetChase Public

    R package for systematic prioritization of GWAS loci using OpenTargets, IMPC, and TWAShub

    R 1

  5. low-pass-WGS-pipeline low-pass-WGS-pipeline Public

    Step by step analysis for variant calling and imputation from low-pass sequencing data

    Shell

  6. Whole-Genome-Bisulfite-Sequencing-Pipeline Whole-Genome-Bisulfite-Sequencing-Pipeline Public

    R