Output transcript usage matrix.

[liuzhenyu-yyy]

Hi there. Thanks for developing this useful tools on transcriptome assembly & quantification.

I'm curious is it possible to export transcript usage matrix (fraction of each isoform used by corresponding gene, isoform × sample) from IsoQuant output? I've noticed that the visualizer could generate plots for provided genes. It would be really helpful if a comprehensive matrix could be included in or easily derived from the output.

Best
Zhenyu

[andrewprzh]

Hi @liuzhenyu-yyy

Thanks for the feedback!

Currently there is not such output, but I think I can add it to my todo list for the furure release.

Best
Andrey