Search results

Question regarding parallelisation in IsoQuant

Status: Open.

#359 In ablab/IsoQuant;

· andr-kun opened on Dec 18, 2025

High proportion of noninformative reads in isoquant quantification with nuclear RNA-seq samples

Status: Open.

#358 In ablab/IsoQuant;

· dawangran opened on Dec 18, 2025

Q: best practices?

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#357 In ablab/IsoQuant;

· sklages opened on Dec 17, 2025

Test fails due to "No module named 'pysam'"

installationProblem with package installationProblem with package installation

Status: Open.

#356 In ablab/IsoQuant;

· SuhasSrinivasan opened on Dec 15, 2025

resume option and memory usage

Status: Open.

#354 In ablab/IsoQuant;

· xhuashen opened on Dec 9, 2025

transcripts absent in TSV but present in GTF

Status: Open.

#353 In ablab/IsoQuant;

· defendant602 opened on Dec 5, 2025

Output transcript usage matrix.

enhancementNew feature or requestNew feature or request

Status: Open.

#352 In ablab/IsoQuant;

· liuzhenyu-yyy opened on Dec 2, 2025

Visualize.py with --find_genes

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#351 In ablab/IsoQuant;

· GiliWolf opened on Nov 25, 2025

Input data for IsoQuant for single cell pacbio

Status: Open.

#350 In ablab/IsoQuant;

· leewqa opened on Nov 24, 2025

Visualize.py - Error in finding input files

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#349 In ablab/IsoQuant;

· GiliWolf opened on Nov 23, 2025

Running Isoquant in transcripts mode from reads and from bams

Status: Open.

#348 In ablab/IsoQuant;

· apollo994 opened on Nov 6, 2025

IsoQuant can't recognize BAM tag

Status: Open.

#347 In ablab/IsoQuant;

· Choeun-fran opened on Nov 5, 2025