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IsoQuant on Bioconda

installationProblem with package installationProblem with package installation

Status: Open.

#370 In ablab/IsoQuant;

· GaryWang7 opened on Feb 16, 2026

Error with running visualize.py

Status: Open.

#369 In ablab/IsoQuant;

· zhujack opened on Feb 6, 2026

confusion in read assignment

Status: Open.

#366 In ablab/IsoQuant;

· bluemood2011 opened on Feb 4, 2026

wrong gene_id assignment in transcript_models.gtf

algorithmIssue requires algorithmic improvementIssue requires algorithmic improvement

weird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting files

Status: Open.

#363 In ablab/IsoQuant;

· defendant602 opened on Jan 19, 2026

Question regarding parallelisation in IsoQuant

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#359 In ablab/IsoQuant;

· andr-kun opened on Dec 18, 2025

High proportion of noninformative reads in isoquant quantification with nuclear RNA-seq samples

Status: Open.

#358 In ablab/IsoQuant;

· dawangran opened on Dec 18, 2025

Q: best practices?

performanceIssues related to computational perfromanceIssues related to computational perfromance

Status: Open.

#357 In ablab/IsoQuant;

· sklages opened on Dec 17, 2025

Test fails due to "No module named 'pysam'"

installationProblem with package installationProblem with package installation

Status: Open.

#356 In ablab/IsoQuant;

· SuhasSrinivasan opened on Dec 15, 2025

resume option and memory usage

Status: Open.

#354 In ablab/IsoQuant;

· xhuashen opened on Dec 9, 2025

transcripts absent in TSV but present in GTF

algorithmIssue requires algorithmic improvementIssue requires algorithmic improvement

bugSomething isn't workingSomething isn't working

weird resultsSomething looks odd in the resulting filesSomething looks odd in the resulting files

Status: Open.

#353 In ablab/IsoQuant;

· defendant602 opened on Dec 5, 2025

Output transcript usage matrix.

enhancementNew feature or requestNew feature or request

Status: Open.

#352 In ablab/IsoQuant;

· liuzhenyu-yyy opened on Dec 2, 2025

Visualize.py with --find_genes

visualizerRelates to visualization moduleRelates to visualization module

Status: Open.

#351 In ablab/IsoQuant;

· GiliWolf opened on Nov 25, 2025