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Issues list

Inconsistency among *read_assignments.tsv, *.transcript_counts.tsv, and *.gene_counts.tsv question Further information is requested
#290 opened Feb 19, 2025 by airichli
2
No start_codon and stop_codon in GTF file question Further information is requested
#282 opened Feb 6, 2025 by Tang-pro
3
Redundant isoforms algorithm Issue requires algorithmic improvement enhancement New feature or request question Further information is requested
#281 opened Feb 2, 2025 by KMbio43
4
"__no_feature " read in SAMPLE_ID.transcript_counts.tsv file question Further information is requested
#272 opened Dec 31, 2024 by SweetGojoSatoru
1
How IsoQuant label novel isoform discovery in the OUT.transcript_models.gtf question Further information is requested
#271 opened Dec 24, 2024 by yuntianf
1
How IsoQuant works when multiple samples are given as input? question Further information is requested
#269 opened Dec 17, 2024 by dslv3y
5
Hi, just have a quick question, Is it possible to use isoQuant to discover and quantify fusion RNAs? Thanks! enhancement New feature or request question Further information is requested
#267 opened Dec 11, 2024 by yinyuanmtu
6
Is it necessary to de-redundant the resulting transcript model? question Further information is requested weird results Something looks odd in the resulting files
#257 opened Nov 6, 2024 by wjcre2023
9
Handling BAM files with polyA trimmed question Further information is requested
#256 opened Nov 5, 2024 by omarelgarwany
1
antisense classification for ONT direct RNAseq data algorithm Issue requires algorithmic improvement enhancement New feature or request question Further information is requested
#255 opened Nov 4, 2024 by baishengjun
4
how does isoquant deal with same cellular barcode across replicate files? question Further information is requested
#252 opened Oct 10, 2024 by sparthib
1
Specify cutoff for number of reads or number of samples. question Further information is requested
#251 opened Oct 9, 2024 by liuzhenyu-yyy
1
Tweaking minimap2 parameters in Isoquant question Further information is requested
#246 opened Sep 27, 2024 by sanyalab
1
Repeating error mesage: [W::hts_idx_load3] The index file is older than the data file: input data Issue is caused by input data question Further information is requested
#244 opened Sep 23, 2024 by zli-lilly
10
Understanding how inconsistent reads are reused for de novo discovery question Further information is requested
#243 opened Sep 22, 2024 by omarelgarwany
7
Single cell data one library with different conditions question Further information is requested
#234 opened Sep 4, 2024 by vasikara17
2
Ambiguous Novel Transcript Locations and Merging Transcript Models question Further information is requested
#233 opened Sep 4, 2024 by BenneyMRArgue
2
No CDS in the novel genes predicted by Isoquant question Further information is requested
#230 opened Aug 29, 2024 by sqwwww
1
How to Process or Filter the Merged GTF File After Using Isoquant question Further information is requested
#228 opened Aug 27, 2024 by lebronzhong
3
How do I specify FLNC reads in IsoQuant question Further information is requested
#226 opened Aug 19, 2024 by sanyalab
6
Transcript quantification results are inconsistent question Further information is requested
#225 opened Aug 14, 2024 by biochristmas
3
ProTip! Updated in the last three days: updated:>2025-02-20.