Issues

• Spades finished abnormally, OS return value: -9

  ablab/spades#1588 · Filter by author jokopebri opened on Aug 8, 2026

• BinSpreader Error

  ablab/spades#1585 · Filter by author pbelmann opened on Jul 31, 2026

• IUPAC degenerate nucleotide codes accepted as input?

  ablab/spades#1582 · Filter by author RhysCAllen opened on Jul 21, 2026
  4

• Erroneous repeat resolution

  ablab/spades#1581 · Filter by author mjsull opened on Jun 15, 2026
  3

• Native Windows port

  ablab/spades#1578 · Filter by author MrMufasii opened on Jun 6, 2026

• Compiling on Ubuntu 26.04 fails...

  ablab/spades#1572 · Filter by author foisys opened on May 3, 2026
  3

• SPAdes Provides Incorrect Error Statement with Dataset YAML

  ablab/spades#1570 · Filter by author cronkenstein opened on Apr 26, 2026

• Error 12, memory error with hybrid mode

  ablab/spades#1569 · Filter by author l-gallucci opened on Apr 19, 2026

• Will SPAdes include an insert in a contig if the insert is in only 1 set of chromsomes where there is tetraploidy

  ablab/spades#1567 · Filter by author thugib opened on Mar 31, 2026

• alternative software for read error correction?

  ablab/spades#1563 · Filter by author Ruiqi-CUB opened on Mar 11, 2026

• better handle output

  incomplete
  ablab/spades#1560 · Filter by author skorzennik opened on Feb 26, 2026
  7

• Exit immediately if incorrect input files are given with --meta

  ablab/spades#1551 · Filter by author terrycojones opened on Dec 24, 2025

• Target sequence length > 100K, over comparison pipeline limit.

  ablab/spades#1546 · Filter by author lyuchengmarvin opened on Dec 7, 2025
  3

• os return value:-11

  ablab/spades#1544 · Filter by author Wanli-HE opened on Dec 1, 2025

• How to improve N50 of contigs

  ablab/spades#1543 · Filter by author zhangwenda0518 opened on Nov 30, 2025

• Assertion `nucls.size() >= index.k()' failed.

  ablab/spades#1540 · Filter by author sofia-orellanar opened on Nov 7, 2025
  2

• 7 Days Running and Zero Output Updates

  ablab/spades#1539 · Filter by author sofia-orellanar opened on Oct 23, 2025
  1

• How much RAM would be a good fit

  ablab/spades#1536 · Filter by author SantaMcCloud opened on Oct 20, 2025
  3

• Paired information is lost when k-mer mapper is turned off

  enhancementnot a bug
  ablab/spades#1534 · Filter by author andrewprzh opened on Oct 13, 2025

• OS return value: -11

  ablab/spades#1531 · Filter by author sofia-orellanar opened on Oct 3, 2025
  2

• folder not empty error when using multiple libraries

  ablab/spades#1529 · Filter by author Khezri-abd opened on Sep 25, 2025
  6

• spades Assertion `graph_.EdgeEnd(graph_.conjugate(e)) == VertexId()' failed

  ablab/spades#1528 · Filter by author Martin-lc opened on Sep 18, 2025
  1

• finished abnormally, OS return value: 11

  ablab/spades#1521 · Filter by author Qingym820 opened on Sep 9, 2025

• Add option to prefix scaffold/contig names

  ablab/spades#1518 · Filter by author jolespin opened on Aug 29, 2025

• Using SMOOTHING distance estimator,

  ablab/spades#1508 · Filter by author gogoxzm opened on Aug 1, 2025
  3