How to improve N50 of contigs #1543
Description
Hello author, thank you for the rnaviralspades tool you developed,
I am trying to use the public transcriptome data to mine and identify plant viruses, and after going to the host transcriptome data, I use rnaviralspades to assemble more contig than other assembly software, but the N50 value is a bit low.
Since I have limited memory, I assembled each data individually, and now I am thinking about whether I can further merge the assembly results of different samples of PenguiN, such as deredundancy and using congtig overlap to further extend the length of the contig.
Do you have any suggestions? Thank you.