Name	Name	Last commit message	Last commit date
Latest commit History 169 Commits
add_qiime_labels	add_qiime_labels
add_taxa	add_taxa
adjust_seq_orientation	adjust_seq_orientation
align_seqs	align_seqs
alpha_diversity	alpha_diversity
alpha_rarefaction	alpha_rarefaction
assign_taxonomy	assign_taxonomy
beta_diversity	beta_diversity
beta_diversity_through_plots	beta_diversity_through_plots
beta_significance	beta_significance
blast_wrapper	blast_wrapper
check_id_map	check_id_map
cluster_quality	cluster_quality
collate_alpha	collate_alpha
compare_3d_plots	compare_3d_plots
compare_alpha_diversity	compare_alpha_diversity
compare_categories	compare_categories
compare_distance_matrices	compare_distance_matrices
compare_taxa_summaries	compare_taxa_summaries
compute_core_microbiome	compute_core_microbiome
conditional_uncovered_probability	conditional_uncovered_probability
consensus_tree	consensus_tree
convert_fastaqual_fastq	convert_fastaqual_fastq
convert_otu_table_to_unifrac_sample_mapping	convert_otu_table_to_unifrac_sample_mapping
convert_unifrac_sample_mapping_to_otu_table	convert_unifrac_sample_mapping_to_otu_table
core_qiime_analyses	core_qiime_analyses
count_seqs	count_seqs
demultiplex_fasta	demultiplex_fasta
denoiser_preprocess	denoiser_preprocess
dissimilarity_mtx_stats	dissimilarity_mtx_stats
distance_matrix_from_mapping	distance_matrix_from_mapping
extract_seqs_by_sample_id	extract_seqs_by_sample_id
filter_alignment	filter_alignment
filter_distance_matrix	filter_distance_matrix
filter_fasta	filter_fasta
filter_otus_by_sample	filter_otus_by_sample
filter_otus_from_otu_table	filter_otus_from_otu_table
filter_samples_from_otu_table	filter_samples_from_otu_table
filter_tree	filter_tree
inflate_denoiser_output	inflate_denoiser_output
jackknifed_beta_diversity	jackknifed_beta_diversity
make_distance_boxplots	make_distance_boxplots
make_distance_comparison_plots	make_distance_comparison_plots
make_distance_histograms	make_distance_histograms
make_fastq	make_fastq
make_otu_heatmap_html	make_otu_heatmap_html
make_otu_network	make_otu_network
make_otu_table	make_otu_table
make_phylogeny	make_phylogeny
make_prefs_file	make_prefs_file
make_qiime_py_file	make_qiime_py_file
make_rarefaction_plots	make_rarefaction_plots
make_tep	make_tep
map_reads_to_reference	map_reads_to_reference
merge_mapping_files	merge_mapping_files
merge_otu_tables	merge_otu_tables
multiple_rarefactions	multiple_rarefactions
multiple_rarefactions_even_depth	multiple_rarefactions_even_depth
neighbor_joining	neighbor_joining
nmds	nmds
otu_category_significance	otu_category_significance
parallel_align_seqs_pynast	parallel_align_seqs_pynast
parallel_alpha_diversity	parallel_alpha_diversity
parallel_assign_taxonomy_blast	parallel_assign_taxonomy_blast
parallel_assign_taxonomy_rdp	parallel_assign_taxonomy_rdp
parallel_beta_diversity	parallel_beta_diversity
parallel_blast	parallel_blast
parallel_identify_chimeric_seqs	parallel_identify_chimeric_seqs
parallel_map_reads_to_reference	parallel_map_reads_to_reference
parallel_multiple_rarefactions	parallel_multiple_rarefactions
parallel_pick_otus_blast	parallel_pick_otus_blast
parallel_pick_otus_trie	parallel_pick_otus_trie
parallel_pick_otus_uclust_ref	parallel_pick_otus_uclust_ref
per_library_stats	per_library_stats
pick_otus_through_otu_table	pick_otus_through_otu_table
pick_reference_otus_through_otu_table	pick_reference_otus_through_otu_table
pick_subsampled_reference_otus_through_otu_table	pick_subsampled_reference_otus_through_otu_table
plot_rank_abundance_graph	plot_rank_abundance_graph
plot_semivariogram	plot_semivariogram
plot_taxa_summary	plot_taxa_summary
poller	poller
principal_coordinates	principal_coordinates
quality_scores_plot	quality_scores_plot
relatedness	relatedness
shared_phylotypes	shared_phylotypes
simsam	simsam
single_rarefaction	single_rarefaction
sort_otu_table	sort_otu_table
split_fasta_on_sample_ids	split_fasta_on_sample_ids
split_libraries	split_libraries
split_libraries_fastq	split_libraries_fastq
split_otu_table	split_otu_table
split_otu_table_by_taxonomy	split_otu_table_by_taxonomy
start_parallel_jobs	start_parallel_jobs
start_parallel_jobs_sc	start_parallel_jobs_sc
start_parallel_jobs_torque	start_parallel_jobs_torque
subsample_fasta	subsample_fasta
summarize_otu_by_cat	summarize_otu_by_cat
summarize_taxa	summarize_taxa
summarize_taxa_through_plots	summarize_taxa_through_plots

Name

Last commit message

Last commit date

169 Commits

add_qiime_labels

add_taxa

adjust_seq_orientation