v0.1.4

What's Changed

• Update README.md by @avanlinden in #14
• Update AD.model.csv by @MasterPastures in #15
• Update AD.model.csv by @MasterPastures in #16
• Initial model updates by @avanlinden in #18
• Setup dictionary site by @avanlinden in #19
• Add level 2 pages by @avanlinden in #20
• add Parent for attrib Filename by @avanlinden in #21
• modify data model for dictionary app by @avanlinden in #22
• Update AD.model.csv by @ameliakallaher in #25
• Create csv modules for DataProperty attributes + associated valid values by @avanlinden in #27
• Assemble modules action by @avanlinden in #28
• test update to module csv by @avanlinden in #29
• Add minimal conditional logic for file annotations by @avanlinden in #30
• attempt cross-manifest ID checks by @avanlinden in #32
• use schema id rather than displayName by @avanlinden in #33
• Undo cross-manifest ID validation rules by @avanlinden in #34
• alphabetize study names by @avanlinden in #35
• xcheck specimenID target biospecimen by @avanlinden in #36
• remove protectAges rule by @avanlinden in #37
• Update validation rules by @avanlinden in #38
• Update study.csv by @ameliakallaher in #39
• Refactor data model by @avanlinden in #40
• Model fixes by @avanlinden in #42
• add isMultispec dependency by @avanlinden in #43
• delete static site configs and content by @avanlinden in #51
• Update study.csv by @ameliakallaher in #45
• bump schematic version by @avanlinden in #53
• pull changes from main by @avanlinden in #54
• fix requirements.txt by @avanlinden in #56
• Change id requirements by @avanlinden in #55
• remove protected filename attr from record-only manifests by @avanlinden in #58
• Added new term 'Leiden Oxylipins' under module 'assay' by @MasterPastures in #60
• merge changes from PR #60 --> main back into this branch by @avanlinden in #62
• Added new term 'lysophospholipids' under module 'metabolomics' by @MasterPastures in #61
• Add manifest generation tests by @avanlinden in #63
• Automate test manifest generation by @avanlinden in #64
• fine-tune CI action by @avanlinden in #68
• Add NPS-AD terms by @avanlinden in #69
• Code review of identify_changed_manifests_for_testing.py by @nlee-sage in #66
• specify diff between main and PR branch by @avanlinden in #71
• Update ci by @avanlinden in #74
• rename assay valid value for metadataType by @avanlinden in #73
• Test changed manifests only by @avanlinden in #76
• rename template to match template config display name by @avanlinden in #77
• Added Illumina DNA PCR-Free Prep Kit added to libraryPrep by @ameliakallaher in #79
• Update README.md by @avanlinden in #84
• Add-neuropath-template by @ameliakallaher in #81
• fix template config by @avanlinden in #87
• updated individual animal model ad template by @ameliakallaher in #88
• Update consortium.csv by @ryaxley in #89
• update true for required atttributes by @ameliakallaher in #90
• Add MODEL-AD studies by @ryaxley in #93
• added neuropath attributes as new csvs by @ameliakallaher in #92
• Update study.csv with values 'iNiAstshRNA' and 'Trisomy21iN' by @MasterPastures in #95
• generate all current manifests by @avanlinden in #97
• Remove duplicate cohort attribute by @avanlinden in #99
• add a fake valid value for testing by @avanlinden in #100
• remove test value by @avanlinden in #101
• Added 'ADMC_ADNI_Biocrates_MxP_Q500' to studies and valid values for … by @MasterPastures in #103
• Added values 'Tulsa LIBR-1000', 'MIND', 'BEAM', 'MARS-WI', 'POINTER',… by @MasterPastures in #104
• Update sex.csv with 'missing or unknown' value for edge cases by @MasterPastures in #106
• set metaboliteType validation rule as "list like" by @avanlinden in #107
• APOE E4 binary attribute by @avanlinden in #108
• Added new secret to generate-current-manifests.yml by @MasterPastures in #110
• Added trivial 'DELETEME' value to study.csv by @MasterPastures in #112
• Update generate-current-manifests.yml by @MasterPastures in #114
• Update manifests by @github-actions[bot] in #115
• Removed validation rule in brainWeight by @ryaxley in #117
• add strain animal metadata template and attributes by @ameliakallaher in #96
• Updated generate-current-manifests.yml to create a new PR instead of … by @MasterPastures in #111
• Update manifests by @github-actions[bot] in #119
• Added "Biocrates MxP Quant500 XL" to assay.csv by @MasterPastures in #121
• Update manifests by @github-actions[bot] in #122
• Added 'AGMP_TULSA _1000_LIBR' as valid value to study.csv by @MasterPastures in #123
• Update manifests by @github-actions[bot] in #124
• Added 'Caltech' to individualIdSource.csv by @MasterPastures in #125
• Added 'AGMP_ANIMAL_MODELS' to study.csv by @MasterPastures in #127
• Update manifests by @github-actions[bot] in #126
• bump schematic version to 24.11.2 by @avanlinden in #128
• Add "AGMP" to consortium.csv by @MasterPastures in #130
• Update manifests by @github-actions[bot] in #131
• Added DAM Models_CU to study.csv by @MasterPastures in #132
• Update manifests by @github-actions[bot] in #133
• [Schematic-221] Upload Metadata Templates to Synapse from GitHub Action by @GiaJordan in #134
• Update manifests by @github-actions[bot] in #135
• Clear-ad-template-updates-jan2025 by @ameliakallaher in #136
• Update manifests by @github-actions[bot] in #137
• Added 'CUMC_Compounds_Microglia' as valid value to study.csv by @MasterPastures in #138
• Update manifests by @github-actions[bot] in #139
• updated and added new attributes for CLEAR-AD individual human template by @ameliakallaher in #140
• Update manifests by @github-actions[bot] in #141
• updates for CLEAR-AD needed for individual and biospecimen templates by @ameliakallaher in #142
• Update manifests by @github-actions[bot] in #143
• Clear-ad-updates-v2 by @ameliakallaher in #144
• Update manifests by @github-actions[bot] in #145
• Update spelling to sage.annotations-demographics.hypercholesterolemia… by @MasterPastures in #146
• Update assay.csv with trivial value "DELETEME" by @MasterPastures in #147
• Removed trivial value "DELETEME" from assay.csv by @MasterPastures in #148
• Update manifests by @github-actions[bot] in #149
• Added mCITE-Seq to study.csv by @MasterPastures in #150
• Update manifests by @github-actions[bot] in #151
• Added ISB_Taner_CollagenDomain to study.csv by @MasterPastures in #152
• Update manifests by @github-actions[bot] in #153
• Added 'ISB_Taner_Cxcl10', 'ISB_Taner_PTN_MDK', 'ISB_Taner_sIL10r_sIL4… by @MasterPastures in #154
• Update manifests by @github-actions[bot] in #155
• Added 'WHICAP_Immunoprofiling' to study.csv by @MasterPastures in #157
• Update manifests by @github-actions[bot] in #158
• added clear-ad cohorts by @ameliakallaher in #161
• Update manifests by @github-actions[bot] in #162
• updated data contribution group by @ameliakallaher in #166
• Update manifests by @github-actions[bot] in #168
• updated ethnicity and individualIDSource by @ameliakallaher in #167
• Update manifests by @github-actions[bot] in #169
• updated diagnosis valid values by @ameliakallaher in #170
• merge updated diagnosis valid values by @ameliakallaher in #171
• Update manifests by @github-actions[bot] in #172
• added nucleicAcidType by @ameliakallaher in #173
• Update manifests by @github-actions[bot] in #174
• updated rnaSeq template by @ameliakallaher in #175
• Update manifests by @github-actions[bot] in #176
• Update manifests by @github-actions[bot] in #178
• Update study.csv to add 'Emory_Levey_300_CSF_FNIH' by @MasterPastures in #180
• Update study.csv with Ast10_Communication by @MasterPastures in #182
• Update study.csv with CD74-IHC by @MasterPastures in #183
• Update study.csv with T Cell_AD by @MasterPastures in #184
• Update study.csv with CUIMC2_Mult by @MasterPastures in #185
• add new assay template spatial transcriptomics by @ameliakallaher in #187
• add new spatial transcriptomics template to template config file by @ameliakallaher in #189
• Update manifests by @github-actions[bot] in #181
• add two terms to template by @ameliakallaher in #190
• Update manifests by @github-actions[bot] in #191
• Update README.md by @ameliakallaher in #194
• add initial build workflow file by @SageGJ in #197
• Update study.csv with DivCo_HS by @MasterPastures in #199
• [SCHEMATIC-342] Refactor Workflows by @SageGJ in #196
• Update Schematic Dependency by @SageGJ in #205
• [SCHEMATIC-346] Add Workflow for Registering JSONSchema by @SageGJ in #200
• Fix path for JSONSchema upload script by @SageGJ in #206
• Change branch from 'test-main' to 'main' by @SageGJ in #209
• Add pr open trigger to build workflow by @SageGJ in #211
• Update study.csv to add 'Virus_Resilience_Organoids' II by @MasterPastures in #212
• Update study.csv to add 'Virus_Resilience_Organoids' III by @SageGJ in #213
• Add functionality to auto merge labeled PRs and delete branches by @SageGJ in #214
• Update study.csv to add 'Virus_Resilience_Organoids' IIII by @SageGJ in #215
• Add virus resilience organoids to study csv iiii by @SageGJ in #216
• Add virus resilience organoids to study csv iiii by @SageGJ in #217
• Add virus resilience organoids to study csv iiii by @SageGJ in #218
• update JSONSchema registration script for client v4.8.0 by @SageGJ in #220
• Update study.csv to add 'Virus_Reslience_Organoids' by @MasterPastures in #221

New Contributors

• @MasterPastures made their first contribution in #15
• @ameliakallaher made their first contribution in #25
• @nlee-sage made their first contribution in #66
• @ryaxley made their first contribution in #89
• @github-actions[bot] made their first contribution in #115
• @GiaJordan made their first contribution in #134

Full Changelog: v0.1.0...v0.1.4