[ENH]Type hints for primitive data types in base module

.all-contributorsrc

@@ -2683,24 +2683,6 @@
       "contributions": [
         "code"
       ]
-    },
-    {
-      "login": "HaroonAzamFiza",
-      "name": "HaroonAzamFiza",
-      "avatar_url": "https://avatars.githubusercontent.com/u/183639840?v=4",
-      "profile": "https://github.com/HaroonAzamFiza",
-      "contributions": [
-        "doc"
-      ]
-    },
-    {
-      "login": "Ramana-Raja",
-      "name": "Ramana Raja",
-      "avatar_url": "https://avatars.githubusercontent.com/u/83065061?v=4",
-      "profile": "https://github.com/Ramana-Raja",
-      "contributions": [
-        "code"
-      ]
     }
   ],
   "commitType": "docs"

.github/actions/cpu_all_extras/action.yml

@@ -2,10 +2,6 @@ name: Pip install all_extras with CPU versions
 description: "For CI testing install the CPU version of dependencies with all extras if on ubuntu"
 
 inputs:
-  python_version:
-    description: "Python version used"
-    required: false
-    default: "3.11"
   additional_extras:
     description: "Comma-separated list of additional extras to install"
     required: false
@@ -15,7 +11,7 @@ runs:
   using: "composite"
   steps:
     - name: Install CPU TensorFlow
-      if: ${{ runner.os == 'Linux' && inputs.python_version != '3.13' }}
+      if: runner.os == 'Linux'
       uses: nick-fields/retry@v3
       with:
         timeout_minutes: 30

.github/utilities/issue_assign.py

@@ -3,10 +3,6 @@
 It checks if a comment on an issue or PR includes the trigger
 phrase (as defined) and a mentioned user.
 If it does, it assigns the issue to the mentioned user.
-Users without write access can only have up to 2 open issues assigned.
-Users with write access (or admin) are exempt from this limit.
-If a non-write user already has 2 or more open issues, the bot
-comments on the issue with links to the currently assigned open issues.
 """
 
 import json
@@ -24,52 +20,13 @@
 issue = repo.get_issue(number=issue_number)
 comment_body = context_dict["event"]["comment"]["body"]
 pr = context_dict["event"]["issue"].get("pull_request")
-commenter = context_dict["event"]["comment"]["user"]["login"]
 
+# Assign tagged used to the issue if the comment includes the trigger phrase
 body = comment_body.lower()
-if "@aeon-actions-bot" in body and not pr:
-    # Assign commenter if comment includes "assign me"
-    if "assign me" in body:
-        issue.add_to_assignees(commenter)
-    # Assign tagged used to the issue if the comment includes the trigger phrase
-    elif "assign" in body:
-        mentioned_users = re.findall(r"@[a-zA-Z0-9_-]+", comment_body)
-        mentioned_users = [user[1:] for user in mentioned_users]
-        mentioned_users.remove("aeon-actions-bot")
+if "@aeon-actions-bot" in body and "assign" in body and not pr:
+    mentioned_users = re.findall(r"@[a-zA-Z0-9_-]+", comment_body)
+    mentioned_users = [user[1:] for user in mentioned_users]
+    mentioned_users.remove("aeon-actions-bot")
 
-        for user in mentioned_users:
-            user_obj = g.get_user(user)
-            permission = repo.get_collaborator_permission(user_obj)
-
-            if permission in ["admin", "write"]:
-                issue.add_to_assignees(user)
-            else:
-                # First check if the user is already assigned to this issue
-                if user in [assignee.login for assignee in issue.assignees]:
-                    continue
-
-                # search for open issues only
-                query = f"repo:{repo.full_name} is:issue is:open assignee:{user}"
-                issues_assigned_to_user = g.search_issues(query)
-                assigned_count = issues_assigned_to_user.totalCount
-
-                if assigned_count >= 2:
-                    # link to issue
-                    assigned_issues_list = [
-                        f"[#{assigned_issue.number}]({assigned_issue.html_url})"
-                        for assigned_issue in issues_assigned_to_user
-                    ]
-
-                    comment_message = (
-                        f"@{user}, you already have {assigned_count} "
-                        f"open issues assigned."
-                        "Users without write access are limited to self-assigning two"
-                        "issues.\n\n"
-                        "Here are the open issues assigned to you:\n"
-                        + "\n".join(
-                            f"- {issue_link}" for issue_link in assigned_issues_list
-                        )
-                    )
-                    issue.create_comment(comment_message)
-                else:
-                    issue.add_to_assignees(user)
+    for user in mentioned_users:
+        issue.add_to_assignees(user)

.github/utilities/run_examples.sh

@@ -6,8 +6,7 @@ set -euxo pipefail
 CMD="jupyter nbconvert --to notebook --inplace --execute --ExecutePreprocessor.timeout=600"
 
 excluded=(
-  # try removing when 3.9 is dropped
-  "examples/transformations/signature_method.ipynb"
+    "examples/transformations/signature_method.ipynb"
 )
 if [ "$1" = true ]; then
   excluded+=(

.github/workflows/fast_release.yml

@@ -11,10 +11,9 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
-        uses: actions/setup-python@v5
+      - uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Build project
         run: |
@@ -31,12 +30,6 @@ jobs:
   upload-wheels:
     runs-on: ubuntu-24.04
 
-    environment:
-      name: release
-      url: https://pypi.org/p/aeon/
-    permissions:
-      id-token: write
-
     steps:
       - uses: actions/download-artifact@v4
         with:
@@ -45,3 +38,5 @@ jobs:
 
       - name: Publish package to PyPI
         uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_TOKEN }}

.github/workflows/issue_assigned.yml

@@ -14,7 +14,7 @@ jobs:
 
     steps:
       - name: Create app token
-        uses: actions/create-github-app-token@v2
+        uses: actions/create-github-app-token@v1
         id: app-token
         with:
           app-id: ${{ vars.PR_APP_ID }}
@@ -25,10 +25,10 @@ jobs:
         with:
           sparse-checkout: .github/utilities
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Install PyGithub
         run: pip install -Uq PyGithub

.github/workflows/issue_comment_edited.yml

@@ -15,7 +15,7 @@ jobs:
 
     steps:
       - name: Create app token
-        uses: actions/create-github-app-token@v2
+        uses: actions/create-github-app-token@v1
         id: app-token
         with:
           app-id: ${{ vars.PR_APP_ID }}
@@ -26,10 +26,10 @@ jobs:
         with:
           sparse-checkout: .github/utilities
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Install PyGithub
         run: pip install -Uq PyGithub

.github/workflows/issue_comment_posted.yml

@@ -14,16 +14,16 @@ jobs:
         with:
           sparse-checkout: .github/utilities
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Install PyGithub
         run: pip install -Uq PyGithub
 
       - name: Create app token
-        uses: actions/create-github-app-token@v2
+        uses: actions/create-github-app-token@v1
         id: app-token
         with:
           app-id: ${{ vars.PR_APP_ID }}

.github/workflows/periodic_github_maintenace.yml

@@ -16,14 +16,14 @@ jobs:
 
     steps:
       - name: Create app token
-        uses: actions/create-github-app-token@v2
+        uses: actions/create-github-app-token@v1
         id: app-token
         with:
           app-id: ${{ vars.PR_APP_ID }}
           private-key: ${{ secrets.PR_APP_KEY }}
 
       - name: Stale Branches
-        uses: crs-k/[email protected].1
+        uses: crs-k/[email protected].0
         with:
           repo-token: ${{ steps.app-token.outputs.token }}
           days-before-stale: 140

.github/workflows/periodic_tests.yml

@@ -18,10 +18,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Run check-manifest
         uses: pre-commit/[email protected]
@@ -35,10 +35,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Run pre-commit
         uses: pre-commit/[email protected]
@@ -57,17 +57,17 @@ jobs:
           brew install bash
           /opt/homebrew/bin/bash --version
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Use numba cache to set env variables but not restore cache
         uses: ./.github/actions/numba_cache
         with:
           cache_name: "run-notebook-examples"
           runner_os: ${{ runner.os }}
-          python_version: "3.11"
+          python_version: "3.10"
           restore_cache: "false"
 
       - uses: ./.github/actions/cpu_all_extras
@@ -92,10 +92,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Install aeon and dependencies
         uses: nick-fields/retry@v3
@@ -117,17 +117,17 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Use numba cache to set env variables but not restore cache
         uses: ./.github/actions/numba_cache
         with:
           cache_name: "test-no-soft-deps"
           runner_os: ${{ runner.os }}
-          python_version: "3.11"
+          python_version: "3.10"
           restore_cache: "false"
 
       - name: Install aeon and dependencies
@@ -157,7 +157,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ ubuntu-24.04, macOS-14, windows-2022 ]
-        python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ]
+        python-version: [ "3.9", "3.10", "3.11", "3.12" ]
 
     steps:
       - name: Checkout
@@ -184,7 +184,6 @@ jobs:
 
       - uses: ./.github/actions/cpu_all_extras
         with:
-          python_version: ${{ matrix.python-version }}
           additional_extras: "dev"
 
       - name: Show dependencies
@@ -207,10 +206,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Disable Numba JIT
         run: echo "NUMBA_DISABLE_JIT=1" >> $GITHUB_ENV

.github/workflows/pr_core_dep_import.yml

@@ -24,10 +24,10 @@ jobs:
       - name: Checkout
         uses: actions/checkout@v4
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - name: Install aeon and dependencies
         uses: nick-fields/retry@v3

.github/workflows/pr_examples.yml

@@ -30,18 +30,18 @@ jobs:
           brew install bash
           /opt/homebrew/bin/bash --version
 
-      - name: Setup Python 3.11
+      - name: Setup Python 3.10
         uses: actions/setup-python@v5
         with:
-          python-version: "3.11"
+          python-version: "3.10"
 
       - if: ${{ github.event_name != 'pull_request' || !contains(github.event.pull_request.labels.*.name, 'no numba cache') }}
         name: Restore numba cache
         uses: ./.github/actions/numba_cache
         with:
           cache_name: "run-notebook-examples"
           runner_os: ${{ runner.os }}
-          python_version: "3.11"
+          python_version: "3.10"
 
       - uses: ./.github/actions/cpu_all_extras
         with: