[DO NOT MERGE] eval #3333 i:1: Dont relabel imported annotation properties (opencode/openai/gpt-5.4, .)

[cmungall]

⚠️ EVALUATION ONLY - DO NOT MERGE ⚠️

Original Issue

#3333: Dont relabel imported annotation properties

Original PR (human solution)

#3547: Do not relabel imported annotation properties (again).

Agent Commits

• Remove redundant annotation property labels

Note: This PR diff shows ONLY the agent's changes. The baseline is eval_base_branch.

Agent Response - PR Comments

Implemented the issue by removing redundant rdfs:label annotation assertions for imported annotation properties from src/ontology/cl-edit.owl.

Rationale:

• Those labels are already provided by imported content, so repeating them in the edit file is unnecessary.
• Keeping the duplicate labels in the edit file causes avoidable churn and spurious diffs.
• I limited the change to the imported-property label assertions in the annotation property header block and left CL-specific annotation-property metadata untouched.

Files changed:

• src/ontology/cl-edit.owl

What was removed:

• Redundant labels for imported annotation properties including obo:IAO_0000028, oboInOwl:SubsetProperty, oboInOwl:consider, oboInOwl:hasBroadSynonym, oboInOwl:hasDbXref, oboInOwl:hasExactSynonym, oboInOwl:hasNarrowSynonym, oboInOwl:hasRelatedSynonym, oboInOwl:hasSynonymType, oboInOwl:inSubset, and rdfs:seeAlso.

Checks completed:

• Read the imported issue context from __issue_context__.json.
• Verified the request was clear and scoped to redundant imported annotation-property labels.
• Searched src/ontology/cl-edit.owl for the targeted rdfs:label assertions.
• Confirmed after editing that those targeted assertions were no longer present.
• Reviewed the git diff to ensure only the intended ontology file was committed.

Validation notes:

• This was a minimal textual cleanup with no class axioms or ontology structure changes.
• I did not run a full ontology validation pipeline because the change only removes redundant annotation assertions and does not alter logical content.

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🤖 Generated by opencode agent

• Runtime: opencode
• Model: openai/gpt-5.4
• Agent config: ai4curation/cl-agent-config@v3:.
• Iteration: 1
• Run: View workflow run

Agent Response - Issue Comments

Addressed in a local commit and ready for PR creation as PR #.

Summary: removed redundant rdfs:label axioms for imported annotation properties from src/ontology/cl-edit.owl to reduce spurious diffs while preserving locally defined annotation-property metadata.

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🤖 Generated by opencode agent

• Runtime: opencode
• Model: openai/gpt-5.4
• Agent config: ai4curation/cl-agent-config@v3:.
• Iteration: 1
• Run: View workflow run

Experiment Config

Parameter	Value
Model	openai/gpt-5.4
Agent config	ai4curation/cl-agent-config@v3:.
Iteration	1
URL prefix	https://href.li/?
Base branch	eval-base-issue-3333

See workflow artifacts for full agent trace.

[cmungall]

📋 Traces: traces/25977345225