[DO NOT MERGE] eval #3497 i:1: [NTR] Fasciacyte (opencode/openai/gpt-5.4, .)

[cmungall]

⚠️ EVALUATION ONLY - DO NOT MERGE ⚠️

Original Issue

#3497: [NTR] Fasciacyte

Original PR (human solution)

#3574: Add new CL term: fasciacyte (CL_9900001)

Agent Commits

• Add fasciacyte term

Note: This PR diff shows ONLY the agent's changes. The baseline is eval_base_branch.

Agent Response - PR Comments

Added a new Cell Ontology term for fasciacyte in src/ontology/cl-edit.owl.

Summary of changes:

• Added new class CL_9900001 with label fasciacyte.
• Placed it under the requested parent CL_0000499 (stromal cell).
• Added a textual definition based on the issue request and supporting literature.
• Added supporting definition xrefs to PMID:29575206 and PMID:33573365.
• Added issue tracking metadata linking the term to issue #3497.
• Added the requested ORCID contributor annotation: https://orcid.org/0000-0002-5507-2103.
• Added creator and timestamp metadata for the new term.
• Added fasciocyte as an exact synonym to capture the alternate spelling variant.

Rationale:

• The issue requested a new CL term for a fascia-associated stromal cell specialized for hyaluronan-rich extracellular matrix production and fascial gliding.
• The supplied parent term was CL_0000499, which matches the requested broad placement as a stromal cell.
• The cited papers support the distinguishing morphology, marker profile, fascia localization, and role in hyaluronan-rich ECM production and fascial gliding.

Checks completed:

• Read the imported issue context from __issue_context__.json.
• Confirmed the requested parent term CL_0000499 exists and is labeled stromal cell.
• Confirmed no existing fasciacyte term was already present in src/ontology/cl-edit.owl.
• Reviewed the cited PubMed records for PMID:29575206 and PMID:33573365.
• Followed the repository's one-line-per-axiom editing style and new-term metadata patterns.
• Reviewed the final git diff to ensure the change was limited to the new term addition.

Validation notes:

• Source-level validation was completed by inspecting the inserted axioms and final diff.
• I could not run aurelian in this environment because the command was not available.
• I did not run ROBOT validation in this pass.

Committed locally:

• af122ec Add fasciacyte term

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🤖 Generated by opencode agent

• Runtime: opencode
• Model: openai/gpt-5.4
• Agent config: ai4curation/cl-agent-config@v3:.
• Iteration: 1
• Run: View workflow run

Agent Response - Issue Comments

Addressed in PR #.

Added a new CL term for fasciacyte under stromal cell, with definition, references, issue link, timestamp, and contributor metadata from the request.

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🤖 Generated by opencode agent

• Runtime: opencode
• Model: openai/gpt-5.4
• Agent config: ai4curation/cl-agent-config@v3:.
• Iteration: 1
• Run: View workflow run

Experiment Config

Parameter	Value
Model	openai/gpt-5.4
Agent config	ai4curation/cl-agent-config@v3:.
Iteration	1
URL prefix	https://href.li/?
Base branch	eval-base-issue-3497

See workflow artifacts for full agent trace.

[cmungall]

📋 Traces: traces/25977517848