Skip to content

[DO NOT MERGE] eval #2844 i:1: [EPIC] Retinal Ganglion Cells refactoring (claude/opus-4.7, .)#599

Open
cmungall wants to merge 1 commit into
eval-base-issue-2844from
scribe-v1-ai4curation-cl-agent-config-v3-.-claude-opus-4-7-iter1-issue-2844
Open

[DO NOT MERGE] eval #2844 i:1: [EPIC] Retinal Ganglion Cells refactoring (claude/opus-4.7, .)#599
cmungall wants to merge 1 commit into
eval-base-issue-2844from
scribe-v1-ai4curation-cl-agent-config-v3-.-claude-opus-4-7-iter1-issue-2844

Conversation

@cmungall

Copy link
Copy Markdown
Member

⚠️ EVALUATION ONLY - DO NOT MERGE ⚠️

Original Issue

#2844: [EPIC] Retinal Ganglion Cells refactoring

Original PR (human solution)

#3451: Add intrinsically photosensitive retinal ganglion cell (CL_9900000)

Agent Commits

No commits from agent

Note: This PR diff shows ONLY the agent's changes. The baseline is eval_base_branch.

Agent Response - PR Comments

No changes were made for this issue.

Issue #2844 is an EPIC umbrella issue tracking four sub-issues (#3176, #3177, #3178, #3179). Two are already closed; the remaining two (#3177 and #3179) are themselves complex sub-issues whose detailed requirements were not available to me in the issue context. I requested clarification on the originating issue rather than committing speculative changes.


🤖 Generated by claude agent

  • Runtime: claude
  • Model: claude-opus-4-7
  • Agent config: ai4curation/cl-agent-config@v3:.
  • Iteration: 1
  • Run: View workflow run

Agent Response - Issue Comments

Hi - this issue is an EPIC tracking four sub-issues, two of which (#3176 and #3178) are already checked off as complete. The remaining open items reference separate sub-issues:

  • #3177 — "details of synaptic IO and morphology (mono vs bis-stratified) not reflected in formal axioms"
  • #3179 — "Main focus = mouse where we have two nomenclatures + more in the literature"

I don't have direct access to the content of those sub-issues, and they each appear to be substantial pieces of work in their own right (formalization of synaptic input/output and morphological stratification axioms; reconciliation of multiple mouse RGC nomenclatures). Rather than guess at the scope, could you clarify what you'd like done here? Options as I see them:

  1. Close this EPIC as a tracking-only ticket and address #3177 and #3179 in their own PRs.
  2. Point me at a specific concrete subset of work from #3177 or #3179 you'd like tackled first (e.g. a particular set of RGC terms, a specific axiom pattern to apply).
  3. Share the relevant sub-issue text (or paste the key requirements here) so I can act on them in one combined PR.

For reference I also looked at the linked discussion thread comment (obophenotype/cell-ontology#2217 (comment)) and the Google Doc is mentioned but not directly accessible to me.

No changes have been committed pending clarification.


🤖 Generated by claude agent

  • Runtime: claude
  • Model: claude-opus-4-7
  • Agent config: ai4curation/cl-agent-config@v3:.
  • Iteration: 1
  • Run: View workflow run

Experiment Config

Parameter Value
Model claude-opus-4-7
Agent config ai4curation/cl-agent-config@v3:.
Iteration 1
URL prefix https://href.li/?
Base branch eval-base-issue-2844

See workflow artifacts for full agent trace.

Model: claude-opus-4-7
Issue repo: obophenotype/cell-ontology
Agent config: ai4curation/cl-agent-config@v3:.
Iteration: 1

Artifacts: https://github.com/ai4curation/eval-ont-agent-cl/actions/runs/25980937204#artifacts
@cmungall

Copy link
Copy Markdown
Member Author

📋 Traces: traces/25980937204

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant