Use uv.lock in CI + other devops tweaks

[danielhollas]

Various CI and devops tweaks split from #329 since they are unrelated to Python 3.14 support.

• Actually use uv.lock in CI
• remove unneeded dependencies
• bump some dependencies
• Upgrade uv.lock

output from uv lock --upgrade

❯ uv lock --upgrade
Resolved 187 packages in 344ms
Updated aiormq v6.8.1 -> v6.8.1, v6.9.2
Updated anyio v4.8.0 -> v4.11.0
Updated argon2-cffi v23.1.0 -> v25.1.0
Updated argon2-cffi-bindings v21.2.0 -> v25.1.0
Added arrow v1.4.0
Added async-lru v2.0.5
Updated attrs v20.3.0 -> v22.2.0
Updated beautifulsoup4 v4.13.3 -> v4.14.2
Updated bleach v6.2.0 -> v6.2.0, v6.3.0
Updated certifi v2025.1.31 -> v2025.10.5
Updated cffi v1.17.1 -> v2.0.0
Updated charset-normalizer v3.4.1 -> v3.4.4
Updated click v8.1.8 -> v8.1.8, v8.3.0
Updated comm v0.2.2 -> v0.2.3
Updated coverage v7.6.12 -> v7.10.7, v7.11.0
Updated debugpy v1.8.12 -> v1.8.17
Updated decorator v5.1.1 -> v5.2.1
Updated distlib v0.3.9 -> v0.4.0
Removed entrypoints v0.4
Updated exceptiongroup v1.2.2 -> v1.3.0
Updated fastjsonschema v2.21.1 -> v2.21.2
Updated filelock v3.17.0 -> v3.19.1, v3.20.0
Added fqdn v1.5.1
Updated gitpython v3.1.44 -> v3.1.45
Updated greenlet v3.1.1 -> v3.2.4
Updated h11 v0.14.0 -> v0.16.0
Added httpcore v1.0.9
Added httpx v0.28.1
Updated identify v2.6.7 -> v2.6.15
Updated idna v3.10 -> v3.11
Updated importlib-metadata v4.12.0 -> v6.11.0
Updated iniconfig v2.0.0 -> v2.1.0, v2.3.0
Removed ipython-genutils v0.2.0
Updated ipywidgets v7.8.5 -> v8.1.8
Added isoduration v20.11.0
Updated json5 v0.10.0 -> v0.12.1
Added jsonpointer v3.0.0
Updated jsonschema v4.17.3 -> v4.25.1
Added jsonschema-specifications v2025.9.1
Updated jupyter-console v6.4.4 -> v6.6.3
Updated jupyter-core v5.7.2 -> v5.8.1, v5.9.1
Added jupyter-events v0.12.0
Added jupyter-lsp v2.3.0
Updated jupyter-server v1.15.6 -> v2.17.0
Added jupyter-server-terminals v0.5.3
Updated jupyterlab v3.3.4 -> v4.4.10
Added jupyterlab-pygments v0.3.0
Updated jupyterlab-server v2.10.3 -> v2.28.0
Updated jupyterlab-widgets v1.1.11 -> v3.0.16
Added lark v1.3.1
Updated matplotlib-inline v0.1.7 -> v0.2.1
Updated mistune v0.8.4 -> v3.1.4
Updated multidict v6.1.0 -> v6.7.0
Updated mypy-extensions v1.0.0 -> v1.1.0
Removed nbclassic v0.5.6
Updated nbconvert v5.6.1 -> v7.16.6
Updated nbsphinx v0.9.3, v0.9.6 -> v0.9.7
Updated notebook v6.5.4 -> v7.4.7
Added overrides v7.7.0
Updated packaging v24.2 -> v25.0
Updated parso v0.8.4 -> v0.8.5
Updated platformdirs v4.3.6 -> v4.4.0, v4.5.0
Updated pluggy v1.5.0 -> v1.6.0
Updated plumbum v1.9.0 -> v1.10.0
Updated prometheus-client v0.21.1 -> v0.23.1
Updated prompt-toolkit v3.0.50 -> v3.0.52
Updated propcache v0.3.0 -> v0.4.1
Updated psutil v7.0.0 -> v7.1.3
Updated pycparser v2.22 -> v2.23
Updated pygments v2.19.1 -> v2.19.2
Removed pyrsistent v0.20.0
Updated pytest-notebook v0.8.1 -> v0.10.0
Added python-json-logger v4.0.0
Updated pywin32 v308 -> v311
Updated pywinpty v2.0.15 -> v3.0.2
Updated pyyaml v6.0.2 -> v6.0.3
Updated pyzmq v26.2.1 -> v27.1.0
Added referencing v0.36.2, v0.37.0
Updated requests v2.32.3 -> v2.32.5
Added rfc3339-validator v0.1.4
Added rfc3986-validator v0.1.1
Added rfc3987-syntax v1.1.0
Added rpds-py v0.27.1, v0.28.0
Updated setuptools v75.8.0 -> v80.9.0
Updated snowballstemmer v2.2.0 -> v3.0.1
Updated soupsieve v2.6 -> v2.8
Updated sphinx-autobuild v2024.10.3 -> v2024.10.3, v2025.8.25
Updated sqlalchemy v1.4.54 -> v2.0.44
Updated starlette v0.45.3 -> v0.49.3, v0.50.0
Removed testpath v0.6.0
Added tinycss2 v1.4.0
Updated tomli v2.2.1 -> v2.3.0
Updated tornado v6.4.2 -> v6.5.2
Updated types-pyyaml v6.0.12.20241230 -> v6.0.12.20250915
Updated typing-extensions v4.12.2 -> v4.15.0
Added tzdata v2025.2
Added uri-template v1.3.0
Updated urllib3 v2.3.0 -> v2.5.0
Updated uvicorn v0.34.0 -> v0.38.0
Updated virtualenv v20.29.2 -> v20.35.4
Updated watchfiles v1.0.4 -> v1.1.1
Updated wcwidth v0.2.13 -> v0.2.14
Added webcolors v24.11.1, v25.10.0
Updated websocket-client v1.8.0 -> v1.9.0
Updated websockets v15.0 -> v15.0.1
Updated widgetsnbextension v3.6.10 -> v4.0.15
Updated yarl v1.18.3 -> v1.22.0
Updated zipp v3.21.0 -> v3.23.0

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 90.83%. Comparing base (051b3fe) to head (730a5ae).
⚠️ Report is 3 commits behind head on master.

Additional details and impacted files

@@           Coverage Diff           @@
##           master     #330   +/-   ##
=======================================
  Coverage   90.83%   90.83%           
=======================================
  Files          22       22           
  Lines        3009     3009           
=======================================
  Hits         2733     2733           
  Misses        276      276           

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[danielhollas]

CC @unkcpz for review