Single Cell Data Analysis and Integration using MINT

The vignette book is available at this link.

Rproject

Contains the R project that produced the vignette. sessioninfo.md contains the R session information when the current version of the vignette was built.

Rscripts

Contains the R files extracted from the Rmd files.

vignettes-standalone

Self-contained standalone Rmd files that can be run separately.

output

Where the run data can be saved when running the R project. See params section of render_book.R / Rmd files.

data

Where the input data can be saved. Alternatively, all required data for this vignette can be loaded from GitHub (default). See params section of render_book.R / Rmd files.

data/subset

A subset of data can be stored in this location for a faster initial run. See params section of render_book.R.

docs

Contains the bookdown outputs of the Rproject file to create the vignette.