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Bump actions/checkout from 5 to 6 #803

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56 changes: 28 additions & 28 deletions .github/workflows/PR-validation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -55,7 +55,7 @@ jobs:
working-directory: ./pipeline_components/seq_retrieval/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -88,7 +88,7 @@ jobs:
working-directory: ./api/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -121,7 +121,7 @@ jobs:
working-directory: ./webui/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand All @@ -148,7 +148,7 @@ jobs:
working-directory: ./shared_aws/py_package/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -183,7 +183,7 @@ jobs:
working-directory: ./shared_aws/py_package/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -221,7 +221,7 @@ jobs:
working-directory: ./shared_aws/py_package/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -259,7 +259,7 @@ jobs:
working-directory: ./shared_aws/aws_infra/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -299,7 +299,7 @@ jobs:
working-directory: ./shared_aws/aws_infra/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -352,7 +352,7 @@ jobs:
working-directory: ./pipeline_components/aws_infra/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -389,7 +389,7 @@ jobs:
working-directory: ./api/aws_infra/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -426,7 +426,7 @@ jobs:
working-directory: ./webui/aws_infra/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -463,7 +463,7 @@ jobs:
runs-on: ubuntu-24.04
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -515,7 +515,7 @@ jobs:
working-directory: ./pipeline_components/seq_retrieval/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -553,7 +553,7 @@ jobs:
runs-on: ubuntu-24.04
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -600,7 +600,7 @@ jobs:
working-directory: ./pipeline_components/alignment/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -631,7 +631,7 @@ jobs:
working-directory: ./api/pipeline_workflow/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -681,7 +681,7 @@ jobs:
working-directory: ./pipeline_components/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -735,7 +735,7 @@ jobs:
working-directory: ./api/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -769,7 +769,7 @@ jobs:
runs-on: ubuntu-24.04
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -833,7 +833,7 @@ jobs:
working-directory: ./api/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
- name: Download updated api (main) dependencies lock file
Expand Down Expand Up @@ -884,7 +884,7 @@ jobs:
working-directory: ./api/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -936,7 +936,7 @@ jobs:
working-directory: ./api/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -991,7 +991,7 @@ jobs:
working-directory: ./webui/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -1043,7 +1043,7 @@ jobs:
working-directory: ./webui/
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
sparse-checkout: |
Expand Down Expand Up @@ -1072,7 +1072,7 @@ jobs:
runs-on: ubuntu-24.04
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
- name: Download updated webui dependencies lock file
Expand Down Expand Up @@ -1113,7 +1113,7 @@ jobs:
runs-on: ubuntu-24.04
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
fetch-depth: 0
- name: Download updated webui dependencies lock file
Expand Down Expand Up @@ -1170,7 +1170,7 @@ jobs:
role-session-name: gh-actions-${{github.run_id}}.${{github.run_number}}.${{github.run_attempt}}-e2e-testing
aws-region: us-east-1
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
- name: Download API image artifact
uses: actions/download-artifact@v5
with:
Expand Down Expand Up @@ -1258,7 +1258,7 @@ jobs:
- pipeline-seq-retrieval-update-dependency-lock-files
- webui-update-dependency-lock-files
steps:
- uses: actions/checkout@v5
- uses: actions/checkout@v6
with:
ref: ${{ github.head_ref }}
fetch-depth: 0
Expand Down
22 changes: 11 additions & 11 deletions .github/workflows/main-build-and-deploy.yml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,7 @@ jobs:
echo "user-id=${user_id}" >> "$GITHUB_OUTPUT"
env:
GH_TOKEN: ${{ steps.app-token.outputs.token }}
- uses: actions/checkout@v5
- uses: actions/checkout@v6
with:
fetch-depth: 0
token: ${{ steps.app-token.outputs.token }}
Expand Down Expand Up @@ -124,7 +124,7 @@ jobs:
needs: [commit-deps-lock-updates, on-deploy]
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
fetch-depth: 0
Expand Down Expand Up @@ -161,7 +161,7 @@ jobs:
working-directory: shared_aws/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Setup node.js (CDK CLI requirement)
Expand Down Expand Up @@ -205,7 +205,7 @@ jobs:
working-directory: pipeline_components/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Setup node.js (CDK CLI requirement)
Expand Down Expand Up @@ -248,7 +248,7 @@ jobs:
working-directory: api/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Setup node.js (CDK CLI requirement)
Expand Down Expand Up @@ -291,7 +291,7 @@ jobs:
working-directory: webui/aws_infra
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Setup node.js (CDK CLI requirement)
Expand Down Expand Up @@ -329,7 +329,7 @@ jobs:
tagname: ${{ needs.commit-deps-lock-updates.outputs.git-describe }}
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
sparse-checkout: |
Expand Down Expand Up @@ -368,7 +368,7 @@ jobs:
tagname: ${{ needs.commit-deps-lock-updates.outputs.git-describe }}
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
sparse-checkout: |
Expand Down Expand Up @@ -407,7 +407,7 @@ jobs:
tagname: ${{ needs.commit-deps-lock-updates.outputs.git-describe }}
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Set up Docker Buildx
Expand Down Expand Up @@ -459,7 +459,7 @@ jobs:
tagname: ${{ needs.commit-deps-lock-updates.outputs.git-describe }}
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Report node version stored in .nvmrc
Expand Down Expand Up @@ -514,7 +514,7 @@ jobs:
tagname: ${{ needs.commit-deps-lock-updates.outputs.git-describe }}
steps:
- name: Check out repository code
uses: actions/checkout@v5
uses: actions/checkout@v6
with:
ref: ${{ needs.commit-deps-lock-updates.outputs.latest-commit-sha }}
- name: Setup node.js (CDK CLI requirement)
Expand Down