Labels

• duplicate

  A duplicate issue
• vdj-10x

  scRNA-seq dataset prepared using 10X Genomics kit (or similar) with TCR/BCR
• vdj-10x-immudex

  scRNA-seq dataset prepared using 10X Genomics kit (or similar) + UMI-tagged MHC-multimers
• vdj-negative

  Negative data on TCRs and epitopes they don't recognize
• vdj-synth-screen

  High-throughput TCR synthesis + screening
• vdjdb-build-infrastructure

  VDJdb aggregation, compilation and proofreading infrastructure development
• vdjdb-build-summary

  VDJdb summary report generation infrastructure development
• vdjdb-maintainance

  Critical issues requiring complex maintenance works
• vdjdb-records-associations

  Inferred (directly or indirectly) antigen receptor:condition associations.
• vdjdb-records-communication

  Dataset sent by internal or external collaborators
• vdjdb-records-dataset

  A dataset of antigen receptors and cognate antigens, e.g. publicly available 10X+Immudex assay data
• vdjdb-records-formatting&proofreading

  Typos and errors that need to be fixed in one or multiple VDJdb records
• vdjdb-records-meta-paper

  A paper listing several studies and datasets that can be imported into VDJdb
• vdjdb-records-other-db

  Antigen specificity information present in public databases, e.g. genbank or PDB
• vdjdb-records-paper

  A published study listing TCRs and cognate antigens with PubMed ID
• vdjdb-records-paper-pending

  A placeholder for paper yet to be published that will be incorporated into VDJdb
• vdjdb-records-preprint

  A study listing TCRs and cognate antigens available on arxiv/biorxiv
• vdjdb-structural

  Interop with structural data
• vdjdb-typos

  Minor typos to fix
• vdjdb-validation

  Positive and negative validation of TCR specificity records