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Merged
anyaevostinar merged 14 commits into from
Jul 16, 2026
Merged

added default configs to example-settings-cfg #318

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5191ebf
added default configs to example-settings-cfg
Gabe-Rose Jul 10, 2026
3423d47
fixed HealthMuturalist setting
Gabe-Rose Jul 10, 2026
3093ce2
Merge branch 'main' into adding_defaultconfigs
anyaevostinar Jul 13, 2026
1bc4d94
Rename SymSettings_Health_Muturalist.cfg to SymSettings_Health_Mutual…
anyaevostinar Jul 13, 2026
8257da9
Rename SymSettings_Stress_Muturalist.cfg to SymSettings_Stress_Mutual…
anyaevostinar Jul 13, 2026
61656a2
Fix typo in health mutualist configuration
anyaevostinar Jul 13, 2026
efaebcc
Fix typo in settings file comment
anyaevostinar Jul 13, 2026
ca279dc
Refactor SymSettings_Stress_Mutualist.cfg
anyaevostinar Jul 13, 2026
c667d49
updated config
Gabe-Rose Jul 13, 2026
f8741ef
fixed conflicts
Gabe-Rose Jul 13, 2026
25b7d0e
Merge branch 'main' into adding_defaultconfigs
anyaevostinar Jul 14, 2026
9040c08
fixed typo
Gabe-Rose Jul 14, 2026
4d04877
Merge branch 'adding_defaultconfigs' of https://github.com/Gabe-Rose/…
Gabe-Rose Jul 14, 2026
fad02af
Merge branch 'main' into adding_defaultconfigs
anyaevostinar Jul 16, 2026
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66 changes: 66 additions & 0 deletions example-settings-cfg/SymSettings_Health_Mutualist.cfg
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# Timestamp: 2026-07-10 10:12:17
# Make: health mutualist


### MAIN ###
set SEED 10 #What value should the random seed be? ----- int (<=0 is random)
set DATA_INT 200 #How frequently, in updates, should data print? ----- int
set SYNERGY 4 #Amount symbiont's returned resources should be multiplied by ----- float
set VERTICAL_TRANSMISSION 1 #Probability of symbiont vertically transmitting when host reproduces ----- float [0, 1]
set START_MOI 1 #Ratio of symbionts to hosts that experiment should start with ----- int
set UPDATES 400000 #Number of updates to run before quitting ----- int
set HOST_REPRO_RES 256 #How many resources required for host reproduction ----- int
set SYM_HORIZ_TRANS_RES 128 #How many resources required for symbiont non-lytic horizontal transmission ----- int
set OUSTING 1 #Should ousting (incoming symbiont kills and replaces existing symbiont) be turned on? ----- int (1 : True, 0 : False)
set FILE_PATH Data #Output file path ----- string (path)
set FILE_NAME _data #Root output file name ----- string

### PHYLOGENY ###
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### MUTATION ###
set MUTATION_SIZE 0 #Standard deviation of the distribution to mutate by ----- float
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### ECTOSYMBIOSIS ###

### TAG_MATCHING ###

### SGP ###
set CYCLES_PER_UPDATE 16 #Number of CPU cycles that organisms run every update ----- int (should be a power of 2)
set FIND_NEIGHBOR_HOST_ATTEMPTS 5 #How many times to attempt finding a neighboring host for symbiont to horizontally transmit into ----- int
set HOST_MIN_CYCLES_BEFORE_REPRO 0 #Number of CPU cycles organisms must wait between reproductions ----- int
set SYM_MIN_CYCLES_BEFORE_REPRO 0 #Number of CPU cycles organisms must wait between reproductions ----- int
set TASK_PROFILE_MODE self-all #What should we use for task profiles for host-symbiont compatibility, preferential ousting, etc.? ----- string (Options : parent-all, self-all, self-first, parent-first. 'all' means all tasks, 'first' means only first task performed)
set TASK_PROFILE_COMPATIBILITY_MODE task-any-match #How is compatibility determined for task profiles? ----- string (Options: always, task-any-match, task-perfect-match)
#set #FUTURE_FEATURE HOST_SYM_COMPATIBILITY_MODE task-stronger-match #How is compatibility determined for hosts/symbiont for transmission? ----- string (Options: always, task-any-match, task-stronger-match)
set HORIZONTAL_TRANSMISSION_COMPATIBILITY_MODE task-profile-strictly-stronger-match #How is compatibility determined for horizontal transmission? ----- string (TASK_PROFILE_COMPATIBILITY_MODE must be set appropriately)(Options: always, task-profile-compatible, task-profile-strictly-stronger-match, task-profile-stronger-or-equal-match)

### SGP_MUTATION ###
set SGP_MUT_PER_BIT_RATE 0.005 #Per-bit mutation rate for sgp programs ----- float

### STRESS ###
set STRESS_TYPE mutualist #What kind of stress symbionts should be incorporated in stressful environments? ----- string (Options: 'mutualist', 'parasite', 'neutral')
set MUTUALIST_DEATH_CHANCE 0 #What death chance does a mutualist confer? ----- float [0, 1]
set BASE_DEATH_CHANCE 0.75 #What death chance does a host have in the absence of symbionts? ----- float [0, 1]
set PARASITE_NUM_OFFSPRING_ON_STRESS_INTERACTION 0 #Number of offspring stress parasite can produce when host dies during stress event ----- int

### HEALTH ###
set ENABLE_HEALTH 1 #Health interactions enabled? ----- int
set HEALTH_TYPE mutualist #What kind of health symbionts are used? ----- string (Options: 'parasite', 'mutualist')
set MUTUALIST_CYCLE_GAIN_PROP 0.75 #Proportion of cycles gained when host has health mutualist ----- float (1.0 = gain additional 100% of base cycles)
set MUTUALIST_CYCLE_DONATE_MULTIPLIER 4 #Multiply cycles donated by symbiont by this value ----- float
set PARASITE_CYCLE_LOSS_PROP 0.75 #Proportion of cycles lost when host has health parasite ----- float [0, 1]
set PARASITE_CYCLE_STEAL_MULTIPLIER 4 #Parasite gained cycles = (host cycles * parasite cycle loss prop) * multiplier ----- float
set HEALTH_INTERACTION_CHANCE 1 #Probability of host-symbiont health interaction each update ----- float [0, 1]

### NUTRIENT ###

### TASK_ENVIRONMENT ###
set TASK_ENV_CFG_PATH enviorment.json #Json file that provides environment configuration ----- string (filename.json)
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set TASK_IO_BANK_SIZE 10000 #How many possible task input/output combinations to pre-generate? ----- int
set HOST_ONLY_FIRST_TASK_CREDIT 1 #Only give host credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)
set SYM_ONLY_FIRST_TASK_CREDIT 1 #Only give sym credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)

### TEMP_CHANGING_ENVIRONMENT ###

### DATA ###
set PRINT_INTERVAL 100 #How often to print run status ----- int
67 changes: 67 additions & 0 deletions example-settings-cfg/SymSettings_Health_Parasite.cfg
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# Timestamp: 2026-07-10 10:11:51
# Make: health parasite


### MAIN ###
set SEED 10 #What value should the random seed be? ----- int (<=0 is random)
set DATA_INT 200 #How frequently, in updates, should data print? ----- int
set SYNERGY 4 #Amount symbiont's returned resources should be multiplied by ----- float
set VERTICAL_TRANSMISSION 0 #Probability of symbiont vertically transmitting when host reproduces ----- float [0, 1]
set START_MOI 1 #Ratio of symbionts to hosts that experiment should start with ----- int
set UPDATES 400000 #Number of updates to run before quitting ----- int
set HOST_REPRO_RES 1 #How many resources required for host reproduction ----- int
set SYM_HORIZ_TRANS_RES 1 #How many resources required for symbiont non-lytic horizontal transmission ----- int
set HOST_AGE_MAX 500 #The maximum number of updates hosts are allowed to live ----- int (-1 is infinite)
set OUSTING 1 #Should ousting (incoming symbiont kills and replaces existing symbiont) be turned on? ----- int (1 : True, 0 : False)
set FILE_PATH Data #Output file path ----- string (path)
set FILE_NAME _data #Root output file name ----- string

### PHYLOGENY ###

### MUTATION ###
set MUTATION_SIZE 0 #Standard deviation of the distribution to mutate by ----- float

### ECTOSYMBIOSIS ###

### TAG_MATCHING ###

### SGP ###
set CYCLES_PER_UPDATE 16 #Number of CPU cycles that organisms run every update ----- int (should be a power of 2)
set FIND_NEIGHBOR_HOST_ATTEMPTS 5 #How many times to attempt finding a neighboring host for symbiont to horizontally transmit into ----- int
set HOST_MIN_CYCLES_BEFORE_REPRO 100 #Number of CPU cycles organisms must wait between reproductions ----- int
set SYM_MIN_CYCLES_BEFORE_REPRO 10 #Number of CPU cycles organisms must wait between reproductions ----- int
set TASK_PROFILE_MODE self-all #What should we use for task profiles for host-symbiont compatibility, preferential ousting, etc.? ----- string (Options : parent-all, self-all, self-first, parent-first. 'all' means all tasks, 'first' means only first task performed)
set TASK_PROFILE_COMPATIBILITY_MODE task-any-match #How is compatibility determined for task profiles? ----- string (Options: always, task-any-match, task-perfect-match)
#set #FUTURE_FEATURE HOST_SYM_COMPATIBILITY_MODE task-stronger-match #How is compatibility determined for hosts/symbiont for transmission? ----- string (Options: always, task-any-match, task-stronger-match)
set HORIZONTAL_TRANSMISSION_COMPATIBILITY_MODE task-profile-strictly-stronger-match #How is compatibility determined for horizontal transmission? ----- string (TASK_PROFILE_COMPATIBILITY_MODE must be set appropriately)(Options: always, task-profile-compatible, task-profile-strictly-stronger-match, task-profile-stronger-or-equal-match)

### SGP_MUTATION ###
set SGP_MUT_PER_BIT_RATE 0.005 #Per-bit mutation rate for sgp programs ----- float

### STRESS ###
set STRESS_TYPE parasite #What kind of stress symbionts should be incorporated in stressful environments? ----- string (Options: 'mutualist', 'parasite', 'neutral')
set PARASITE_DEATH_CHANCE 0.75 #What death chance does a parasite confer? ----- float [0, 1]
set BASE_DEATH_CHANCE 0 #What death chance does a host have in the absence of symbionts? ----- float [0, 1]
set PARASITE_NUM_OFFSPRING_ON_STRESS_INTERACTION 8 #Number of offspring stress parasite can produce when host dies during stress event ----- int

### HEALTH ###
set ENABLE_HEALTH 1 #Health interactions enabled? ----- int
set HEALTH_TYPE parasite #What kind of health symbionts are used? ----- string (Options: 'parasite', 'mutualist')
set MUTUALIST_CYCLE_GAIN_PROP 0.75 #Proportion of cycles gained when host has health mutualist ----- float (1.0 = gain additional 100% of base cycles)
set MUTUALIST_CYCLE_DONATE_MULTIPLIER 4 #Multiply cycles donated by symbiont by this value ----- float
set PARASITE_CYCLE_LOSS_PROP 0.75 #Proportion of cycles lost when host has health parasite ----- float [0, 1]
set PARASITE_CYCLE_STEAL_MULTIPLIER 4 #Parasite gained cycles = (host cycles * parasite cycle loss prop) * multiplier ----- float
set HEALTH_INTERACTION_CHANCE 1 #Probability of host-symbiont health interaction each update ----- float [0, 1]

### NUTRIENT ###

### TASK_ENVIRONMENT ###
set TASK_ENV_CFG_PATH enviorment.json #Json file that provides environment configuration ----- string (filename.json)
set TASK_IO_BANK_SIZE 10000 #How many possible task input/output combinations to pre-generate? ----- int
set HOST_ONLY_FIRST_TASK_CREDIT 1 #Only give host credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)
set SYM_ONLY_FIRST_TASK_CREDIT 1 #Only give sym credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)

### TEMP_CHANGING_ENVIRONMENT ###

### DATA ###
set PRINT_INTERVAL 100 #How often to print run status ----- int
49 changes: 49 additions & 0 deletions example-settings-cfg/SymSettings_Stress_Mutualist.cfg
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# Timestamp: 2026-07-10 10:10:40
# Make: stress mutualist


### MAIN ###
set SEED 10 #What value should the random seed be? ----- int (<=0 is random)
set DATA_INT 200 #How frequently, in updates, should data print? ----- int
set SYNERGY 4 #Amount symbiont's returned resources should be multiplied by ----- float
set VERTICAL_TRANSMISSION 1 #Probability of symbiont vertically transmitting when host reproduces ----- float [0, 1]
set START_MOI 1 #Ratio of symbionts to hosts that experiment should start with ----- int
set UPDATES 400000 #Number of updates to run before quitting ----- int
set HOST_REPRO_RES 100 #How many resources required for host reproduction ----- int
set SYM_HORIZ_TRANS_RES 50 #How many resources required for symbiont non-lytic horizontal transmission ----- int
set OUSTING 1 #Should ousting (incoming symbiont kills and replaces existing symbiont) be turned on? ----- int (1 : True, 0 : False)
set FILE_PATH Data #Output file path ----- string (path)
set FILE_NAME _data #Root output file name ----- string

### MUTATION ###
set MUTATION_SIZE 0 #Standard deviation of the distribution to mutate by ----- float

### SGP ###
set CYCLES_PER_UPDATE 16 #Number of CPU cycles that organisms run every update ----- int (should be a power of 2)
set FIND_NEIGHBOR_HOST_ATTEMPTS 5 #How many times to attempt finding a neighboring host for symbiont to horizontally transmit into ----- int
set HOST_MIN_CYCLES_BEFORE_REPRO 0 #Number of CPU cycles organisms must wait between reproductions ----- int
set SYM_MIN_CYCLES_BEFORE_REPRO 0 #Number of CPU cycles organisms must wait between reproductions ----- int
set TASK_PROFILE_MODE self-all #What should we use for task profiles for host-symbiont compatibility, preferential ousting, etc.? ----- string (Options : parent-all, self-all, self-first, parent-first. 'all' means all tasks, 'first' means only first task performed)
set TASK_PROFILE_COMPATIBILITY_MODE task-any-match #How is compatibility determined for task profiles? ----- string (Options: always, task-any-match, task-perfect-match)
#set #FUTURE_FEATURE HOST_SYM_COMPATIBILITY_MODE task-stronger-match #How is compatibility determined for hosts/symbiont for transmission? ----- string (Options: always, task-any-match, task-stronger-match)
set HORIZONTAL_TRANSMISSION_COMPATIBILITY_MODE task-profile-strictly-stronger-match #How is compatibility determined for horizontal transmission? ----- string (TASK_PROFILE_COMPATIBILITY_MODE must be set appropriately)(Options: always, task-profile-compatible, task-profile-strictly-stronger-match, task-profile-stronger-or-equal-match)

### SGP_MUTATION ###
set SGP_MUT_PER_BIT_RATE 0.005 #Per-bit mutation rate for sgp programs ----- float

### STRESS ###
set ENABLE_STRESS 1 #Stress interactions enabled? ----- int (1 : True, 0 : False)
set STRESS_TYPE mutualist #What kind of stress symbionts should be incorporated in stressful environments? ----- string (Options: 'mutualist', 'parasite', 'neutral')
set STRESS_FREQUENCY 25 #How often should stress events occur (in updates)? ----- int
set MUTUALIST_DEATH_CHANCE 0 #What death chance does a mutualist confer? ----- float [0, 1]
set BASE_DEATH_CHANCE 0.75 #What death chance does a host have in the absence of symbionts? ----- float [0, 1]
set PARASITE_NUM_OFFSPRING_ON_STRESS_INTERACTION 0 #Number of offspring stress parasite can produce when host dies during stress event ----- int
set PARASITE_ESCAPEE_TIMING on-match-host-death #When should parasites have the opportunity to produce escapees during a stress event? ----- string (Options: on-match-host-death, on-match)

### TASK_ENVIRONMENT ###
set TASK_ENV_CFG_PATH environment.json #Json file that provides environment configuration ----- string (filename.json)
set HOST_ONLY_FIRST_TASK_CREDIT 1 #Only give host credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)
set SYM_ONLY_FIRST_TASK_CREDIT 1 #Only give sym credit for one task (whatever they do first)? ----- int (1 : True, 0 : False)

### DATA ###
set PRINT_INTERVAL 100 #How often to print run status ----- int
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