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feat: PageRank-based image summarizer#192

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Apr 13, 2026
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feat: PageRank-based image summarizer#192
donghaoren merged 1 commit intomainfrom
polo/pagerank-image-summarizer

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@polochau polochau commented Apr 13, 2026

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@polochau polochau requested a review from donghaoren April 13, 2026 21:37
@donghaoren donghaoren merged commit d32b969 into main Apr 13, 2026
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@donghaoren donghaoren deleted the polo/pagerank-image-summarizer branch April 13, 2026 22:15
na399 added a commit to na399/embedding-atlas that referenced this pull request Apr 22, 2026
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commit d32b969
Author: Duen Horng Chau <polochau@users.noreply.github.com>
Date:   Mon Apr 13 18:15:02 2026 -0400

    feat: PageRank-based image summarizer (apple#192)

commit 5938e87
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Apr 6 13:50:36 2026 -0700

    chore: bump version to 0.20.0 (apple#190)

commit ceda439
Author: Donghao Ren <donghao@apple.com>
Date:   Sat Apr 4 18:07:16 2026 -0700

    feat!: new compute_projection API (apple#189)

commit 923e36b
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Apr 3 14:45:00 2026 -0700

    feat: replace the C++ UMAP with Rust based on the original Python version (apple#188)

commit 87bc1fc
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Apr 3 11:59:49 2026 -0700

    feat: replace basic cache with an encrypted cache to prevent leaking information (apple#187)

commit a167c29
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Mar 27 12:51:36 2026 -0700

    feat: adjust count plot category width (apple#186)

commit de2a230
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Mar 26 08:26:10 2026 -0700

    feat: time data type support (apple#185)

commit 94bb7de
Author: Dominik Moritz <589034+domoritz@users.noreply.github.com>
Date:   Wed Mar 25 19:24:25 2026 -0400

    chore: update deps (apple#175)

    Co-authored-by: Donghao Ren <donghao.ren@gmail.com>

commit 061fdc5
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Mar 24 15:24:18 2026 -0700

    chore: bump version to 0.19.1 (apple#184)

commit 242bf44
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Mar 24 15:07:42 2026 -0700

    security: mitigation for supply chain attack in litellm (apple#183)

    There's a supply chain attack in the litellm package.
    This change prevents us from installing the compromised versions (1.82.7 and 1.82.8).

commit d772f7c
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Mar 23 16:36:13 2026 -0400

    fix: valueKind function doesn't handle null values (apple#181)

commit 0daf565
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Mar 23 16:32:16 2026 -0400

    chore: bump version to 0.19.0 (apple#180)

commit 1aa0df0
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Mar 20 23:36:18 2026 -0400

    feat: support audio data with a audio player (apple#179)

commit 269a8e0
Author: Dominik Moritz <589034+domoritz@users.noreply.github.com>
Date:   Fri Mar 20 19:44:06 2026 -0400

    ci: update versions of ci packages (apple#176)

commit 4f49b44
Author: Dominik Moritz <589034+domoritz@users.noreply.github.com>
Date:   Fri Mar 20 19:43:21 2026 -0400

    feat: special color for 0 in counts (apple#178)

commit 5ef7f35
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Mar 16 11:42:28 2026 -0700

    test: update python deps and initial pytest setup for backend folder (apple#173)

commit 148c71e
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Mar 12 12:01:25 2026 -0700

    chore: bump version to 0.18.1 (apple#172)

commit aacf1b0
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Mar 12 10:51:41 2026 -0700

    fix: minor MCP-related issues (apple#171)

commit c8f714e
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Mar 10 11:17:31 2026 -0700

    fix: table header backdrop-blur may not work (apple#168)

commit 98b7008
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Mar 4 16:07:40 2026 -0800

    chore: bump version to 0.18.0 (apple#167)

commit d1d0b91
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Mar 4 15:33:45 2026 -0800

    feat: instances view (replaces the table component) (apple#166)

    Co-authored-by: Dominik Moritz <589034+domoritz@users.noreply.github.com>

commit 38d85d3
Author: Daniel van Strien <davanstrien@users.noreply.github.com>
Date:   Wed Mar 4 18:24:21 2026 +0000

    feat: add --export-metadata option and folder export support (apple#163)

    Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

commit 2e55595
Author: Daniel van Strien <davanstrien@users.noreply.github.com>
Date:   Fri Feb 13 21:36:15 2026 +0000

    feat: support optional datasetUrl in metadata for remote parquet loading (apple#162)

    Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

commit a2a6353
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Feb 11 13:12:37 2026 -0800

    chore: bump version to 0.17.0; npm audit fix (apple#161)

commit 05ee858
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Feb 9 19:34:26 2026 -0800

    fix: improve WebGPU device limits and fallback logic (apple#160)

commit 337b82c
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Feb 2 18:38:30 2026 -0800

    feat: add MCP server support for the command line tool (apple#158)

commit 55bab16
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 29 13:45:35 2026 -0800

    chore: bump version to 0.16.1 (apple#154)

commit e0e79b9
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 29 13:35:12 2026 -0800

    fix: run npm audit fix (apple#153)

commit 9833f6a
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 29 13:18:19 2026 -0800

    chore: update node version for publishing action (apple#152)

commit bf64036
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 29 09:54:23 2026 -0800

    chore: bump version to 0.16.0 (apple#151)

commit 5fde65c
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Jan 28 09:04:17 2026 -0800

    chore: remove NODE_AUTH_TOKEN from npm publish step (apple#150)

commit 4d665d7
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 27 21:41:41 2026 -0800

    chore: npm audit fix and uv update (apple#149)

commit 14e3260
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 27 10:23:53 2026 -0800

    docs: add examples page with more examples (apple#148)

commit 4e3783d
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 20 21:38:30 2026 -0800

    fix: count plot may crash on null values (apple#146)

commit 05f03db
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 20 14:40:39 2026 -0800

    fix: (security) vulnerability with tar and diff packages (apple#145)

commit 2febd82
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 20 13:56:45 2026 -0800

    feat: --with and --query cli options (apple#144)

commit d29a8b0
Author: Donghao Ren <donghao@apple.com>
Date:   Sun Jan 18 13:30:10 2026 -0800

    fix: list layout right panel scroll bar overlap with charts (apple#140)

commit 1f2472b
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Jan 13 09:59:03 2026 -0800

    feat!: support sorting in count plot, improve spec (apple#136)

commit cbf6bad
Author: Dominik Moritz <589034+domoritz@users.noreply.github.com>
Date:   Sun Jan 11 14:50:18 2026 -0500

    feat: link to resources about CORS in error (apple#134)

commit bbd0e00
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 8 10:16:00 2026 -0800

    chore: bump version to 0.15.0 (apple#133)

commit 413400c
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Jan 8 09:33:41 2026 -0800

    fix: (security) preact has JSON VNode Injection issue (apple#132)

commit c716b80
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Jan 7 22:49:51 2026 -0800

    fix: visual glitch with downsampled points when points are ordered spatially (apple#130)

commit 101718e
Author: Oh-Hyun Kwon <kwonoh@me.com>
Date:   Tue Jan 6 00:51:41 2026 -0500

    fix: typo in line chart description (apple#129)

commit cdcece9
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Dec 22 16:53:05 2025 -0800

    fix: race condition in search and perf issues (apple#125)

commit 87a0c6a
Author: Donghao Ren <donghao@apple.com>
Date:   Sun Dec 21 13:08:11 2025 -0800

    feat: allow loading data from URL (apple#124)

commit 66950a5
Author: Dominik Moritz <589034+domoritz@users.noreply.github.com>
Date:   Tue Dec 16 11:12:46 2025 -0500

    ci: revert to recommended version tag (apple#123)

commit 20af34a
Author: Salman Chishti <salmanmkc@GitHub.com>
Date:   Tue Dec 16 16:12:27 2025 +0000

    ci: upgrade GitHub Actions for Node 24 compatibility (apple#121)

    Signed-off-by: Salman Muin Kayser Chishti <13schishti@gmail.com>

commit 060c2a6
Author: Salman Chishti <salmanmkc@GitHub.com>
Date:   Tue Dec 16 16:00:59 2025 +0000

    ci: upgrade GitHub Actions to latest versions (apple#122)

    Signed-off-by: Salman Muin Kayser Chishti <13schishti@gmail.com>

commit b8e6bce
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Dec 15 19:35:29 2025 -0800

    chore: bump version to 0.14.0 (apple#119)

commit 8fa7aad
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Dec 15 18:34:15 2025 -0800

    fix: search box may appear underneath charts in dashboard layout (apple#120)

commit 63e9481
Author: Max Dumas <max@dumas.nyc>
Date:   Sun Dec 14 00:42:49 2025 -0500

    feat: add viewport-dependent density-based downsampling (apple#118)

    Add GPU-accelerated viewport-dependent downsampling to the point cloud renderer. When rendering large datasets, the system automatically reduces the number of rendered points while preserving visual fidelity by biasing the sampling toward dense regions. This unlocks a much higher upper bound for the size of datasets the viewer can work with, in practice.

    See apple#118 for more details.

commit 962ed59
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Dec 3 15:03:50 2025 -0800

    feat: add url state saving to upload page (apple#115)

commit 8adcee7
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Dec 3 13:04:27 2025 -0800

    fix: dependabot alert (mdast-util-to-hast) (apple#116)

commit 2d534d1
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Dec 3 09:29:48 2025 -0800

    fix: overriding derived values in predicates widget (apple#114)

commit dc0b1d8
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Dec 3 08:11:37 2025 -0800

    feat: allow adjusting embedding view colors and ordinal colors in theme (apple#113)

commit 888f790
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Nov 24 21:29:51 2025 -0800

    fix: labels may overlap when embedding view is resized (apple#108)

commit ed86911
Author: Dominik Moritz <domoritz@gmail.com>
Date:   Sun Nov 23 15:05:39 2025 -0500

    chore: update feature flag note (apple#106)

commit 46f66a9
Author: Dominik Moritz <domoritz@gmail.com>
Date:   Sun Nov 23 15:02:25 2025 -0500

    feat: move export into dedicated menu action, increase spacing between buttons (apple#104)

    Co-authored-by: Donghao Ren <donghao@apple.com>
    Co-authored-by: Donghao Ren <donghao.ren@gmail.com>

commit e41e345
Author: Donghao Ren <donghao@apple.com>
Date:   Sat Nov 22 09:37:37 2025 -0800

    fix: scroll dashboard to new chart on adding a new chart with plus button (apple#105)

commit 9ca1a8c
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Nov 20 21:20:34 2025 -0800

    chore: bump version to 0.13.0 (apple#102)

commit a437657
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Nov 20 15:38:13 2025 -0800

    fix: better WebGPU feature check (apple#101)

commit 534ca9a
Author: Péter Gyarmati <dev.petergy@gmail.com>
Date:   Fri Nov 21 01:57:13 2025 +0400

    chore: exclude sensitive and irrelevant args from text projection hash (apple#100)

commit 234dbc4
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Nov 18 11:42:34 2025 -0800

    fix: for large x y values the embedding view disappears (apple#98)

commit 922fd65
Author: Donghao Ren <donghao@apple.com>
Date:   Mon Nov 17 21:44:39 2025 -0800

    feat: redesign chart spec schema, add line chart, bubble chart, and eCDF chart (apple#97)

commit c6ad26b
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Nov 14 11:05:33 2025 -0800

    chore: update packages (apple#95)

commit 2cb3e88
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Nov 14 09:39:23 2025 -0800

    feat: messages format renderer (apple#94)

commit ae722e5
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Nov 13 16:47:58 2025 -0800

    feat: add markdown widget (apple#93)

commit ba99694
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Nov 12 23:55:21 2025 -0800

    feat: add dashboard layout (apple#92)

commit 435384c
Author: Péter Gyarmati <dev.petergy@gmail.com>
Date:   Thu Nov 13 00:16:37 2025 +0400

    feat: support multiple text embedding providers (apple#76)

commit 57ec186
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Oct 28 11:57:47 2025 -0700

    chore: bump version to 0.12.0 (apple#83)

commit 591aa4f
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Oct 28 11:43:25 2025 -0700

    chore: update node version in CI to 24 (apple#82)

commit 048a391
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Oct 24 18:52:04 2025 -0700

    fix: table custom cell and header messed up and not updating (apple#80)

commit 1b51237
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Oct 24 08:47:11 2025 -0700

    feat: replace code editor with CodeMirror (apple#79)

commit 7973575
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Oct 21 21:26:08 2025 -0700

    refactor: re-organize charts in the viewer code and minor improvements (apple#75)

    Cleanup and re-organize the code for the Embedding Atlas view to a better structure, including:
    - Move charts to a dedicated folder.
    - Move layouts to a dedicated folder.
    - Move utility functions to a separate "utils" module and a "utils" folder, and separate them into files.

    Let the root view own the chart states, instead of individual charts own their states and "sync" with the root view.

commit e2916e4
Author: Melissa Kilby <melissa.kilby.oss@gmail.com>
Date:   Fri Oct 17 21:34:15 2025 +0000

    chore: restrict GitHub workflow permissions - future-proof (apple#73)

commit a23a7a3
Author: Dominik Moritz <domoritz@gmail.com>
Date:   Thu Oct 16 17:31:50 2025 -0400

    docs: make it clearer that the notebook works on different platforms (apple#72)

commit 58c3653
Author: Derek Perkins <derek@nozzle.io>
Date:   Fri Oct 10 21:56:04 2025 -0600

    Fix typo in table.md (apple#70)

commit ea33e7f
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Oct 9 12:17:08 2025 -0700

    chore: bump version to 0.11.0 (apple#68)

commit dbdc291
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Oct 8 16:27:12 2025 -0700

    feat: default to server-side DuckDB (apple#66)

commit 41e3cf8
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Oct 8 10:19:26 2025 -0700

    chore: update dependency requirements (apple#65)

commit 5cad2c7
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Oct 7 17:15:40 2025 -0700

    fix: widgets not working in DuckDB 1.4.0 (apple#64)

commit 6ce0298
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 24 11:48:50 2025 -0700

    test: add basic python install test (apple#63)

commit 1d3add5
Author: Dominik Moritz <domoritz@gmail.com>
Date:   Sun Sep 21 20:50:01 2025 -0400

    chore: fix typo in comment (apple#62)

commit 3a18db8
Author: Donghao Ren <donghao@apple.com>
Date:   Sat Sep 20 17:41:23 2025 -0700

    chore: add shields to README.md (apple#61)

commit 51c0e7d
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Sep 18 19:30:31 2025 -0700

    chore: bump version to 0.10.0 (apple#57)

commit 1a46b8c
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Sep 18 18:33:46 2025 -0700

    fix: jupyter widget issues in vscode (apple#59)

commit 8ea1aa9
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Sep 18 07:54:19 2025 -0700

    fix: dark mode scroll bars (apple#58)

commit bb47434
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 17 14:40:15 2025 -0700

    chore: update Mosaic to 0.19.1 (apple#56)

    - Cleanup typings with the latest update.
    - Replace the custom `makeClient` with Mosaic's `makeClient`.
    - Bump version of other deps as well.

commit 985b4ac
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 17 12:32:50 2025 -0700

    feat: [breaking] add options for custom labels and automatic label parameters (apple#55)

    Add two options to Embedding Atlas command line tool:

    * --labels: Allow users to pass in a list of labels. If this is specified, the tool will display user-specified labels, instead of automatically generating labels from data.
    * --stop-words: Allow users to pass in a list of stop words. User-specified stop words will override the builtin stop words.

    To accomplish the above, we made some minor refactors to the code to group a number of config options into a single structure, in order to make it easier to pass those options around.

commit 6e516e3
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Sep 16 09:53:08 2025 -0700

    fix: prevent streamlit component updating needlessly (apple#54)

commit 45a3018
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Sep 9 21:51:27 2025 -0700

    chore: update dependencies (apple#53)

commit 10943f8
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Sep 9 11:37:14 2025 -0700

    fix: cacheKeyForObject errors in non-secure context (apple#52)

commit 023cffd
Author: Dominik Moritz <domoritz@gmail.com>
Date:   Sun Sep 7 21:40:02 2025 -0700

    chore: fix typo captuerd -> captured (apple#49)

commit 2a973b2
Author: Donghao Ren <donghao@apple.com>
Date:   Sun Sep 7 10:24:02 2025 -0700

    fix: type check errors (apple#47)

commit a9facd8
Author: Donghao Ren <donghao@apple.com>
Date:   Sat Sep 6 10:47:46 2025 -0700

    test: run type checks (apple#45)

commit 6529f25
Author: Viktor Stenby <viktor.stenby@vippsmobilepay.com>
Date:   Fri Sep 5 02:49:56 2025 +0200

    feat: add --point-size argument (apple#44)

commit 97b4f7a
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 3 15:16:35 2025 -0700

    chore: bump version to 0.9.0 (apple#43)

commit 64572ee
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 3 14:40:03 2025 -0700

    fix: smaller font size for JSON display (apple#42)

commit 056df4d
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Sep 3 10:46:19 2025 -0700

    feat: add options to customize tooltip (apple#41)

    Add more options to customize tooltip:

    - For the "Text Style" options, currently there is only a text renderer option for each column. We will change to this:
        - Rename title "Text Style" to "Column Styles"
        - Add a dropdown with "Hidden", "Minified", and "Full" to allow customizing how each column is displayed in the tooltip.
        - When the display type is image, have a option to set the image size.
    - In settings panel, remove the "Tooltip" dropdown --- it's superseded by above.
    - For the search result box, use the same component as the tooltip, for consistency.

    Minor fixes and styling adjustments:
    - Clicking the nearest neighbor in search result should trigger the tooltip (just like clicking a row in the table)
    - Add a little bit of transparency and background blur for tooltip and legend.

commit b8c54f3
Author: Donghao Ren <donghao@apple.com>
Date:   Tue Sep 2 16:34:18 2025 -0700

    chore: replace wasm-pack with wasm-bindgen-cli (apple#40)

commit fbc71f3
Author: Donghao Ren <donghao@apple.com>
Date:   Sun Aug 31 09:54:21 2025 -0700

    refactor: [breaking] use Intl.Segmenter to generate cluster labels (apple#38)

commit 1aca297
Author: Donghao Ren <donghao@apple.com>
Date:   Fri Aug 29 15:34:17 2025 -0700

    test: add tests for wasm packages (apple#39)

commit 8099c57
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Aug 28 08:03:52 2025 -0700

    test: build wasm modules in CI (apple#37)

commit 8c3503b
Author: Donghao Ren <donghao@apple.com>
Date:   Thu Aug 28 08:02:50 2025 -0700

    docs: add information about default model and reproducibility (apple#36)

commit 843440f
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Aug 27 20:28:06 2025 -0700

    refactor: [breaking] change umap, knn, and findClusters API to camelCase (apple#34)

commit 8b129e3
Author: Donghao Ren <donghao@apple.com>
Date:   Wed Aug 27 17:11:54 2025 -0700

    refactor: move the density clustering code to its own internal package (apple#33)
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@polochau @donghaoren