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Pull requests list

Fix lowercase atom name encoding
#369 opened Aug 13, 2026 by Tanokri02 Contributor Loading…
Fix 278 C1 Add mmCIF preflight validation safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#368 opened Aug 12, 2026 by Tanokri02 Contributor Loading…
2
fix: fail on unknown molecule types safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#367 opened Aug 12, 2026 by YashBhardwaj21 Loading…
Fix issue 278 C4: Add minimal CCD builder for faster preprocessing
#364 opened Aug 11, 2026 by Tanokri02 Contributor Loading…
fix: keep inference intermediates under the output directory
#363 opened Aug 10, 2026 by ahmedtaha100 Contributor Loading…
1
3
refactor: teardown NCCL process group enhancement New feature or request inference Relating to the inference pipeline
#361 opened Aug 10, 2026 by jandom Collaborator • Draft
@jandom
fix: multi-gpu nodes hangs in run_openfold predict bug Something isn't working inference Relating to the inference pipeline
#360 opened Aug 10, 2026 by jandom Collaborator • Draft
@jandom
1
ci: run full coverage with GPU tests
#357 opened Aug 5, 2026 by jandom Collaborator • Draft
@jandom
1
fix: use bin centers, not left edges, for pLDDT/PAE/PDE classificatio… bug Something isn't working science Discussions about scientific aspects of OpenFold3
#355 opened Aug 5, 2026 by Pana-TsK Contributor Loading…
1
Reweighted Triton Ball-Query Smooth lDDT with 51-Structure Protein–RNA Validation training Relating to the training pipeline
#351 opened Aug 4, 2026 by Lim-ZQ Loading…
fix: two bugs in extract_alignments_to_pair (crash + off-by-one) bug Something isn't working science Discussions about scientific aspects of OpenFold3
#350 opened Aug 2, 2026 by Pana-TsK Contributor Loading…
4
Deduplicate template hits by sequence safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#348 opened Jul 30, 2026 by etowahadams Contributor Loading…
@jandom
6
fix: correct deletion_value coefficient (was 4x too large) bug Something isn't working science Discussions about scientific aspects of OpenFold3
#347 opened Jul 30, 2026 by Pana-TsK Contributor Loading…
@jandom
3
fix: propagate per-chain MSA padding mask into msa_mask bug Something isn't working science Discussions about scientific aspects of OpenFold3
#346 opened Jul 30, 2026 by Pana-TsK Contributor Loading…
doc update for #172: updating the docs to correctly reflect that msa … documentation Improvements or additions to documentation
#337 opened Jul 24, 2026 by Pana-TsK Contributor Loading…
1
3
Optimize the handling of missing version_tensor
#329 opened Jul 21, 2026 by bluecake-dh Contributor Loading…
2
Build template pair features from coordinates online training Relating to the training pipeline
#322 opened Jul 19, 2026 by heathcliff233 Loading…
5 tasks done
1
Reduce inference peak memory with chunking and fine-grained lifecycle control training Relating to the training pipeline
#321 opened Jul 18, 2026 by heathcliff233 Loading…
4 tasks
Inference determinism: atom aggregation, feature seeding, and chunk-size reuse training Relating to the training pipeline
#320 opened Jul 18, 2026 by heathcliff233 Loading…
Add fused kernels for fast, low-memory inference training Relating to the training pipeline
#318 opened Jul 17, 2026 by heathcliff233 Loading…
1 task done
1
Multimer templates inference by unmasking inference Relating to the inference pipeline
#315 opened Jul 16, 2026 by rostro36 Contributor Loading…
3
refactor: prepare deepspeed for ejection safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#292 opened Jul 2, 2026 by jandom Collaborator Loading…
@jandom
9
Do boolean mask sums directly in fp32 safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#282 opened Jun 27, 2026 by GMNGeoffrey Contributor Loading…
2
Fix degeneracy in attention kernel backward tests safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#258 opened Jun 12, 2026 by GMNGeoffrey Contributor Loading…
Add CIF template-based generating example notebook safe-to-test Internal only label used to indicate PRs that are ready for automated CI testing.
#255 opened Jun 11, 2026 by sukritsingh Loading…
@jandom
9
ProTip! Updated in the last three days: updated:>2026-08-10.