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Pull requests: aqlaboratory/openfold

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Pull requests list

Fix SoloSeq embedding truncation behavior
#580 opened Jun 8, 2026 by samanyuckulkarni123 Loading…
Expose mmseqs --db-load-mode in precompute_alignments_mmseqs.py
#579 opened Jun 7, 2026 by XunOuyang Loading…
Fix incorrect atom ordering in Protein.atom_positions comment (N, CA, C)
#578 opened Jun 4, 2026 by XunOuyang Loading…
1
Fix script_utils invalid regex escape warning
#577 opened May 10, 2026 by taivu1998 Loading…
1
Fix duplicate-sequence multimer mmCIF chain coordinates
#576 opened May 10, 2026 by taivu1998 Loading…
1
Fix batched multimer template embedding shapes
#575 opened May 10, 2026 by taivu1998 Loading…
1
Fix template offload helpers for long-sequence inference
#574 opened May 10, 2026 by taivu1998 Loading…
1
Fix batched supervised chi periodicity loss
#573 opened May 10, 2026 by taivu1998 Loading…
1
Fix per-example loss scaling for mixed-length batches
#572 opened May 10, 2026 by taivu1998 Loading…
1
Fix chain center-of-mass loss weighting
#571 opened May 10, 2026 by taivu1998 Loading…
1
Remove unused atom14 default-frame gather
#570 opened May 10, 2026 by taivu1998 Loading…
1
Bump actions/checkout from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#558 opened Nov 20, 2025 by dependabot Bot Loading…
Bump actions/setup-python from 5 to 6 dependencies Pull requests that update a dependency file github_actions Pull requests that update GitHub Actions code
#552 opened Sep 4, 2025 by dependabot Bot Loading…
High-level diagrams for openfold's codebase
#543 opened Jul 4, 2025 by ivanmilevtues Loading…
3
Explicitly set reentrant to False for torch checkpointing
#528 opened Mar 31, 2025 by an1lam Loading…
1
Feat/cyclic offset
#526 opened Mar 22, 2025 by ioannisa92 Loading…
2
Update PDB download link
#507 opened Nov 18, 2024 by davidsimon Loading…
fix: set numpy and deepspeed dependency versions
#503 opened Nov 13, 2024 by etowahadams Contributor Loading…
2
Update run_pretrained_openfold.py
#493 opened Oct 12, 2024 by Lix1993 Loading…
fix typo in config.py
#487 opened Sep 14, 2024 by Lix1993 Loading…
Bug Fix: Preserve full FASTA ID in alignment directory parsing to prevent truncation errors
#485 opened Sep 7, 2024 by juliocesar-io Loading…
OpenFold Local Jupyter Notebook 📔 | Metrics, Plots, Concurrent Inference
#484 opened Aug 28, 2024 by juliocesar-io Loading…
Fix for docs on deepspeed inference
#482 opened Aug 26, 2024 by josemduarte Collaborator Loading…
@christinaflo @ljarosch
3
Update Inference.md - missing backslash
#478 opened Aug 23, 2024 by vaclavhanzl Contributor Loading…
Remove manual -std=c++14 flag for compatibility
#450 opened May 29, 2024 by jnooree Loading…
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