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1. BD2KGenomics/protect BD2KGenomics/protect Public

   Python 30 13

2. DataBiosphere/toil DataBiosphere/toil Public

   A WDL, CWL and Python API supporting easy-to-use workflow engine. It is scalable, efficient and cross-platform (Linux/macOS).

   Python 924 244

3. BD2KGenomics/s3am BD2KGenomics/s3am Public

   A fast, parallel, streaming multipart uploader for S3

   Python 14 6

4. Transgene Transgene Public

   This is a repository to host the transgene tool. Transgene takes a snpeffed vcf and a peptide fasta , and returns 3 peptide fastas containing 9-, 10- and 15-mers harboring the called mutations

   Python 1 1

5. bioinfo_tool_wrappers bioinfo_tool_wrappers Public

   General Python Wrappers for bioinformatics needs.

   Python 1

6. rankboost rankboost Public

   The scripts that conduct the rank boosting step in the precision immuno pipeline

   Python