Matlab release 2.5 (#689)

* Doc for release 2.5

* Packager for release 2.5

* Rebased on master

* feat: modify template to generate doc with m2html

* feat: update directory list

* doc: separate contents (autogenerated) and README

* Doc: update contents

* Restore atmat/at.m and atmat/Contents.m

* Add CoorectorPass bug fix in the release notes

* Added Contents.m files

* Update the release notes to take the last commits into account

* increment the release notes

---------

Co-authored-by: Laurent S. Nadolski <[email protected]>

Author: lfarv

Contents.m

@@ -16,7 +16,7 @@ AT is based on a 6-D modular tracking engine written in C/C++ for efficiency. La
 
 View on GitHub</param.description>
     <param.screenshot>${PROJECT_ROOT}/developer/matlab/AT.png</param.screenshot>
-    <param.version>2.4</param.version>
+    <param.version>2.5</param.version>
     <param.output>${PROJECT_ROOT}/Accelerator Toolbox.mltbx</param.output>
     <param.products.name />
     <param.products.id />
@@ -43,25 +43,33 @@ View on GitHub</param.description>
 % **/*.bak
 .*
 **/.*
+_custom_build
+build
+dist
 atoctave
 developer
 doc
 jupyter
 pyat
 resources
 utils
+wheelhouse
 *.md
 **/*.md
 **/*.rst
 **/*.tar
 **/*.mex*
 **/*.py
 docs/_*
+docs/common
 docs/m
 docs/p
 docs/images
 docs/make.bat
-docs/Makefile</param.exclude.filters>
+docs/Makefile
+MANIFEST.in
+pyproject.toml
+setup.cfg</param.exclude.filters>
     <param.exclude.pcodedmfiles>true</param.exclude.pcodedmfiles>
     <param.examples>&lt;?xml version="1.0" encoding="utf-8"?&gt;
 &lt;examples&gt;
@@ -81,6 +89,7 @@ docs/Makefile</param.exclude.filters>
     <param.matlabpath.excludes>
       <item>/</item>
       <item>/developer/matlab</item>
+      <item>/machine_data/__pycache__</item>
     </param.matlabpath.excludes>
     <param.javaclasspath.excludes>
       <item>/docs/vendor/bundle/ruby/2.6.0/gems/concurrent-ruby-1.1.9/lib/concurrent-ruby/concurrent/concurrent_ruby.jar</item>
@@ -149,7 +158,7 @@ docs/Makefile</param.exclude.filters>
     </build-deliverables>
     <workflow />
     <matlab>
-      <root>/Applications/MATLAB_R2022a.app</root>
+      <root>/Applications/MATLAB_R2023b.app</root>
       <toolboxes>
         <toolbox name="matlabcoder" />
       </toolboxes>
@@ -168,7 +177,7 @@ docs/Makefile</param.exclude.filters>
       <vista>false</vista>
       <linux>false</linux>
       <solaris>false</solaris>
-      <osver>12.5.1</osver>
+      <osver>13.6.1</osver>
       <os32>false</os32>
       <os64>true</os64>
       <arch>maci64</arch>

ToolboxPackagingConfiguration.prj

@@ -0,0 +1,39 @@
+% ATINTEGRATORS
+% See also 
+% 
+%   Contents file for ATINTEGRATORS and its subfolders.
+%   
+%   ATINTEGRATORS
+%   aperture                   - Creates a aperture element in old a AT version (Obsolete)
+%   BndStrMPoleSymplectic4Pass - .m Help file for BndStrMPoleSymplectic4Pass.c
+%   corrector                  - Creates a corrector element in old a AT version (Obsolete)
+%   drift                      - Creates a drift element in old a AT version (Obsolete)
+%   DriftPass                  - - Integrator for Drift spaces
+%   ExactHamiltonianPass       - .m Help file for ExactHamiltonianPass.c
+%   GWigSymplecticPass         - #ok<STOUT>
+%   GWigSymplecticRadPass      - #ok<STOUT>
+%   hmonitor                   - Creates a horizontal monitor element in old AT version (Obsolete)
+%   idtable                    - (fname, Nslice, filename, Energy, method)
+%   idtable_global             - IDTABLE Creates a RADIA-Map based element
+%   marker                     - Creates a marker element in old AT version (Obsolete)
+%   mChangeRefPass             - Change the reference energy by scaling
+%   mDriftPass                 - Example of pass method in matlab
+%   mhdrload_bis               - Loads data from an ASCII file containing multiple text
+%   mIdentityPass              - MDRIFTPASS - example of pass method in matlab
+%   monitor                    - Creates a monitor element in old AT versions (Obsolete)
+%   multipole                  - Creates a thick multipole element in old AT versions (Obsolete)
+%   passmethodlist             - Utility function for MATLAB Compiler
+%   passmethods                - Returns a list of available AT passmethod functions in
+%   quadrupole                 - Creates a quadrupole element in old AT version (Obsolete)
+%   rbend                      - Creates a rectangular bend in old AT version (Obsolete)
+%   rbend2                     - Creates rectangular bend with dipole fringe field  in old AT versions (Obsolete)
+%   rbend3                     - Creates a rectangular bend with different fringe fields at entrance
+%   rfcavity                   - Creates a RF cavity in older AT version
+%   sbend                      - Creates a sector bend element in old AT versions (Obsolete)
+%   sextupole                  - Creates a sextupole element in old AT versions (Obsolete)
+%   skewquad                   - Creates a skewquad element (alias to multipole) in old AT version (Obsolete)
+%   solenoid                   - Creates a solenoid element in old AT versions (Obsolete)
+%   vmonitor                   - Creates a vertical monitor element in old AT version (Obsolete)
+%   wiggler                    - (fname, Ltot, Lw, Bmax, Nstep, Nmeth, By, Bx, method,energy)
+%    
+%   This file was generated by updateContents.m on 06 Nov 2023 at 14:58:13.