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allow low-cov imputation to take either genotype likelihoods or bam f… install #294: Commit 75b7f8a pushed by LindoNkambule
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Merge branch 'main' of https://github.com/atgu/GWASpy install #293: Commit f8b9f5e pushed by LindoNkambule
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updated argparse ref path in pca.py install #292: Commit 506c572 pushed by z-koenig
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updated ref path in pca.py install #291: Commit 9e654cf pushed by z-koenig
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updated all instances of HGDP+1kGP ref to public version install #290: Commit f786c35 pushed by z-koenig
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Merge pull request #4 from atgu/zkoenig_update_jointpca_ref install #289: Commit cd5a5c5 pushed by z-koenig
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updated ref in joint pca to public access path for HGDP+1kGP install #288: Pull request #4 opened by z-koenig
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unset no_whole_stage_codegen after writing VCF to MT install #287: Commit 7891d54 pushed by LindoNkambule
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update docs to include GLIMPSE Hail Batch example install #286: Commit 76fce6c pushed by LindoNkambule
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outputs from GLIMPSE2_phase and GLIMPSE2_ligate are automatically ind… install #285: Commit c16f68e pushed by LindoNkambule
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minor fix for file indexing after running GLIMPSE install #284: Commit e369d02 pushed by LindoNkambule
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fix ref bin output name install #283: Commit 29b91ea pushed by LindoNkambule
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use image with bgzip for extract_ref_sites and properly handle GLIMPS… install #282: Commit 21fa520 pushed by LindoNkambule
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add option to specify chromosomes to run imputation for install #281: Commit a2e3364 pushed by LindoNkambule
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add chromosome number to output filename install #280: Commit 0ff3e08 pushed by LindoNkambule
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index file after fixing install #279: Commit 4178cc1 pushed by LindoNkambule
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use correct fixed_file as output install #278: Commit c125e58 pushed by LindoNkambule
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properly declare the stats file as a resource file install #277: Commit a25cb94 pushed by LindoNkambule
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replace vcf with ref_fasta when reading reference genome install #276: Commit d13b411 pushed by LindoNkambule
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update docs install #275: Commit 56163d8 pushed by LindoNkambule
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declare python requirements required to build the docs install #274: Commit 3a1d30a pushed by LindoNkambule
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add yml file required to build readthedocs install #273: Commit e5e161b pushed by LindoNkambule
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update docs install #272: Commit 69459c7 pushed by LindoNkambule
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fix file naming issue install #271: Commit 6951808 pushed by LindoNkambule
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add moduel for checking and fixing possible allele flips install #270: Commit 4ec1e68 pushed by LindoNkambule
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