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MARSS 3.11.7 (GitHub); MARSS 3.11.8 (CRAN)

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@eeholmes eeholmes released this 20 May 04:27
· 41 commits to master since this release
v3.11.7
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Learn about vigilant mode.

Note: See also notes from 3.11.6.

This release is focused on moving the MARSS User Guide and derivation files into a inst/userguide and inst/derivations along with Makefiles to build. This will facilitate updating MARSS and converting the User Guide to an eBook.

  • Added pkgdown. Note this required special files for MathJax in the pkgdown folder.
  • Removed packages in Suggests: that were associated with the User Guide and tests and not used in examples.
  • Converted Quick_Start.Rnw to Rmd so it works better with pkgdown and renders to html for CRAN.
  • Updated DESCRIPTION and README to refer to marssTMB.
  • Added marssTMB to Suggests with Additional_repositories: https://atsa-es.r-universe.dev

BUGS

  • In predict_marssMLE(), the newdata model.tsp was not being set.
  • In plot.marssMLE(), the CIs for the state residuals did not plot correctly because there is always a NA at the end.
  • In `autoplot.marssMLE(), two plots would always be plotted if one plot type was specified.

DOCUMENTATION

  • Added vignettes/Learning_MARSS.Rmd
  • Fixed various equation formatting typos (unbolded x's and x's that should have been X's in expectations).
  • Added MARSS.dfa() to the manual built by CRAN by removing keyword internal.
  • Added inst/DEVELOPER_NOTES.md
  • Minor change to make the v and w in EMDerivation.Rnw in slant font as they are random variables.
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