r20250508 - Updated masks

This release of the dataset includes changes to the masks of 6 samples:

• sub-rat1_sample-data1
• sub-rat3_sample-data9
• sub-rat3_sample-data10
• sub-rat3_sample-data11
• sub-rat5_sample-data14
• sub-rat6_sample-data15

The changes mostly consisted of separating all fibers with a 1px delineation. In doing so, every individual fiber is separable from its neighbors, assuming every fiber is a 4-connected region in the mask. With these modifications, this semantic segmentation dataset doubles as an instance segmentation dataset.

r20211130

SEM dataset for AxonDeepSeg (https://axondeepseg.readthedocs.io/)

10 rat spinal cord samples with axon and myelin manual segmentation labels.

Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.

BIDS version 1.7.0

r20211018

SEM dataset for AxonDeepSeg (https://axondeepseg.readthedocs.io/)

10 rat spinal cord samples with axon and myelin manual segmentation labels.

Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.

BIDS version 1.6.0 - Microscopy BEP031 version 0.0.5 (2021-09-07T14:20:00)

r20210913

SEM dataset for AxonDeepSeg (https://axondeepseg.readthedocs.io/)

10 rat spinal cord samples with axon and myelin manual segmentation labels.

Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.

BIDS version 1.6.0 - Microscopy BEP031 version 0.0.5 (2021-09-07T14:20:00)

r20210909

SEM dataset for AxonDeepSeg (https://axondeepseg.readthedocs.io/)
10 rat spinal cord samples with axon and myelin manual segmentation labels.

Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.
BIDS version 1.6.0 - Microscopy BEP031 version 0.0.5 (2021-09-07T14:20:00)

r20210715

SEM dataset for AxonDeepSeg
Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.
BIDS version 1.6.0 - Microscopy BEP031 version 0.0.4 (2021-07-13T15:14:00)

r20201008

Example SEM dataset illustrating BIDS convention.
Microscopy BEP031 version 0.0.2 (2020-09-21T09:21:00)