Discovering B cell receptor genotype patterns with mining and association rules

The repository contains the tool to create a network graph based association rules, paths extraction from the graph and classification model.

A short example is provided in the jupyter notebook example.ipynb

Installation

• Clone the repo
• cd to the repo directory
• Install the requirements with pip install -r requirements.txt

you can run the module with a command line as described below

python src/main.py --data_folder data/P1 --metadata data/P1_metadata.tsv

Notes

The module was developed and tested on python 3.10