Krisphom/angio clean - #229

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kristaphommatha wants to merge 75 commits into

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krisphom/angio_clean

Commits on Jun 9, 2025

started to update some import issues
cainja
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0cf2719
fixing compiler errors
cainja
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9915650
fixed compiler errors for angiogenesis
cainja
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fb498be
spotless
cainja
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1748fca

Commits on Jun 10, 2025

updated core graph utilities
cainja
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363d67f
doc string
cainja
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74c0da2
bisection precision tests
cainja
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86ba444
slight refactor
cainja
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3e15f8b
renamed function
cainja
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e146543
capitalization error
cainja
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e9d09f9
java docs
cainja
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17f8d9c
placeholder docstrings
cainja
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a9fd46f
spotless
cainja
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9a2bc91

Commits on Jun 13, 2025

added tests for register and scheduler
cainja
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946889c
added test for getPath
cainja
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253aad3
cleaning up growth component
cainja
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0ba65bf

Commits on Jun 14, 2025

removing redundant variables
cainja
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2c832e6
updated some javadocs
cainja
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5dda2c9

Commits on Jun 15, 2025

linter updates
cainja
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bd7ee7f

Commits on Jun 16, 2025

updated to work with multiple veins
cainja
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fdd8d07
updated boolean argument
cainja
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943281d
updated doc strings
cainja
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5197158

Commits on Jun 17, 2025

updated for consistency
cainja
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eb06923
added input argument into string
cainja
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4d2fe52

Commits on Jun 18, 2025

removed some useless code
cainja
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a7572c1
added doc string
cainja
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98ad1bf

Commits on Jun 23, 2025

cleaned up some error passing
cainja
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bf1ca4c

Commits on Jun 27, 2025

i have a lot of logging stuff right now
cainja
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a19778e

Commits on Jun 30, 2025

it's a different bug now
cainja
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28dfc5c

Commits on Jul 3, 2025

updated some matrix maths, adding some log statements trying to figure out what's happening
cainja
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cab2f02
spotless
cainja
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9f169a0
updated default threshold
cainja
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6037755
added transport
cainja
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6006b41
added fraction
cainja
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3cce139

Commits on Jul 4, 2025

fixed directional check based on level
cainja
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e48151f

Commits on Jul 7, 2025

edges are still being removed before establishing
cainja
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2086199
still not establishing edges
cainja
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8bb6ef6

Commits on Jul 8, 2025

still having pointer issues
cainja
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2399cb4

Commits on Jul 11, 2025

temp edge fix
kristaphommatha
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79bc465
adding more specific debug log info
kristaphommatha
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5cf3045
debug logging
kristaphommatha
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cfad7eb

Commits on Jul 12, 2025

more debug logs
kristaphommatha
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5e74cb3

Commits on Jul 15, 2025

fix connecting two angio nodes and null sproutDir
kristaphommatha
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db39c38

Commits on Jul 17, 2025

simulation growth is behaving abnormally
cainja
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b1d605e

Commits on Jul 20, 2025

remove node delay logic
cainja
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317484a

Commits on Jul 25, 2025

changed node verification logic
cainja
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d931ac1

Commits on Jul 29, 2025

Commits on Aug 1, 2025

Commits on Aug 3, 2025

resolved conflict
cainja
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7ab6c1a
added back in node delay logic, removed superfluous logging statements
cainja
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b3da84a
removed unnecessary node list
cainja
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9632e82

Commits on Aug 25, 2025

changing path.isEmpty() logic
kristaphommatha
committed
06db7cb

Commits on May 12, 2026