Bailey Lab
- 16 followers
- Providence, RI
- http://www.baileylab.org/
- @baileygenomics
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Repositories
- MIPTools Public
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
bailey-lab/MIPTools’s past year of commit activity - SeekDeep Public
Bioinformatic Tools for analyzing targeted amplicon sequencing developed by Nicholas Hathaway of Bailey Lab
bailey-lab/SeekDeep’s past year of commit activity - MIPWrangler Public
Bioinformatics tools to analyze molecular inversion probe (MIP) sequencing results
bailey-lab/MIPWrangler’s past year of commit activity - compilerProfiler Public
C++ library with an aligner to test different compiler speeds with different optimizations
bailey-lab/compilerProfiler’s past year of commit activity - miplicorn Public
A unified framework for molecular inversion probe and amplicon analysis. Provides the tools to parse, manipulate, analyze, and visualize data.
bailey-lab/miplicorn’s past year of commit activity - map_fastqs_snakemake Public
a snakemake pipeline for mapping fastq entries to a bowtie2 indexed reference genome
bailey-lab/map_fastqs_snakemake’s past year of commit activity - EBV-SWGA Public
bailey-lab/EBV-SWGA’s past year of commit activity - haplotype_variant_calling Public
uses Nick Hathaway's variantCallOnSeqAndProtein script to call variants on vcf files and generate prevalences and amino acid calls
bailey-lab/haplotype_variant_calling’s past year of commit activity - seekdeep_prevalences Public
converts amino acid counts files into miptools formatted counts that are suitable for prevalence estimates
bailey-lab/seekdeep_prevalences’s past year of commit activity