Automatic selection of search parameter values for mass spectrometry-based search engines
For testing the system, Download the demo.zip file:
Click on the demo icon to download the file to your computer.
Unzip the downloaded file:
Locate the downloaded demo.zip file on your computer.
Right-click on the file and select "Extract All" or use a tool like WinRAR or 7-Zip to unzip the file.
Extract the contents to a folder of your choice.
Execute the JAR file with JVM 19:
Ensure that JVM 19 is installed on your computer. You can download it from the official Oracle website.
Open a command prompt or terminal window.
Navigate to the directory where the extracted JAR file is located using the cd command.
Run the JAR file by typing the following command:
java -jar QuickSearchProt-2.0-jar-with-dependencies.jar
To configure the search engine, search parameters, the order of search parameters, and reset the data folder, you can modify the configurations.json file. This file allows you to:
Select the search engine: Specify which search engine to use for your queries.
Set search parameters: Define the parameters to be used during searches.
Order search parameters: Arrange the search parameters in the desired order.
Reset the data folder: Clear or reset the contents of the data folder.
By editing the configurations.json file, you can customize these settings to suit your needs.
If you need further assistance with the specific syntax or examples, feel free to ask!