Create TOC.md

Author: epartan

inst/templates/base/TOC.md

@@ -0,0 +1,37 @@
+The reports in this folder perform [analysis] of [data type(s) e.g. RNAseq] data from [project].
+
+Overall goal: [copy from information.R > "experiment"]
+
+Dataset:
+[Describe the data. If there are multiple datasets and multiple timepoints it may be helpful to have a table like so:
+| Timepoint | 0 | 1 | 2 | 3 | 4 | 5 | 6
+|-----------|---|---|---|---|---|---|----
+| ChIPseq   | + | - | + | - | + | + | +
+| CUT&RUN   | + | - | + | - | + | + | +
+| ATACseq   | - | - | + | + | - | + | -
+| RNAseq    | + | + | + | + | + | + | +
+]
+
+Reports:
+
+1. **Report name**: Short description (can be taken from information.R > "aim")
+    - Analysis step 1 (can be taken from main headers in each report)
+    - Analysis step 2
+    - Analysis step 3
+2. **Report name**: Short description.
+    - Analysis step 1
+    - Analysis step 2
+    - Analysis step 3
+3.  **Report name**: Short description.
+    - Analysis step 1
+    - Analysis step 2
+    - Analysis step 3
+
+**The following reports are integral to the workflow** (while the other reports are more side investigations):
+
+- #1: Short description.
+- #3: Short description.
+
+**FINAL RESULTS ARE PRODUCED IN #3 [Description]:**
+
+- Results can be found in reports/results/file.txt.