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Filter ORA results in differential_expression.qmd #58

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Filter ORA results in differential_expression.qmd #58

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5 changes: 5 additions & 0 deletions 02_differential_expression/differential_expression.qmd
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Expand Up @@ -963,6 +963,11 @@ fa_list <- lapply(de_list, function(contrast) {
all_in_life = all_in_life
) # Annotation databases to query against

# Filter and sort the ORA output for results with an adjust p-value less than 0.05
all <- all %>% filter(padj < 0.05) %>% arrange(padj)
up <- up %>% filter(padj < 0.05) %>% arrange(padj)
down <- down %>% filter(padj < 0.05) %>% arrange(padj)

# Create a list to hold the ORA results for a given contrast
list(
all = all, # Assign the positive and negative lfc combined ORA results to "all"
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