Hi there,
I'm using this pipeline to build our in-house mirna tools, but seems like if we use D. melanogaster with species code:dme and genome data dm6, it will generate the error like:
Building hashes from reference data...
Checking myRNA formatting to format reference data...Done
mirBase...Done
UCSC...
snoRNA...DBD::mysql::st execute failed: Table 'dm6.kgXref' doesn't exist at Annotate.pm line 389.
DBD::mysql::st bind_columns failed: Statement has no result columns to bind (perhaps you need to successfully call execute first, or again) at Annotate.pm line 390.
DBD::mysql::st fetchrow_arrayref failed: fetch() without execute() at Annotate.pm line 391.
I just check the dm6 genome in UCSC, seems it's lack of kgXref tables, is there any solution for this problem? thank you!
Chunhui
Hi there,
I'm using this pipeline to build our in-house mirna tools, but seems like if we use D. melanogaster with species code:dme and genome data dm6, it will generate the error like:
Building hashes from reference data...
Checking myRNA formatting to format reference data...Done
mirBase...Done
UCSC...
snoRNA...DBD::mysql::st execute failed: Table 'dm6.kgXref' doesn't exist at Annotate.pm line 389.
DBD::mysql::st bind_columns failed: Statement has no result columns to bind (perhaps you need to successfully call execute first, or again) at Annotate.pm line 390.
DBD::mysql::st fetchrow_arrayref failed: fetch() without execute() at Annotate.pm line 391.
I just check the dm6 genome in UCSC, seems it's lack of kgXref tables, is there any solution for this problem? thank you!
Chunhui