Public miRbase database

[anishchakka]

Hi,

I have recently started working on miRNAseq analysis and would like to follow your pipeline.

I have the reads trimmed and aligned as per your suggestions. In the next step, I'm struggling to setup the database connection for miRbase in the db_connections.cfg file.

I was able to find one for UCSC, but not able to find miRbase database connection.

hg38 genome-mysql.soe.ucsc.edu genomep password

Can you tell me where I can find details for miRbase as well? I'm trying to fill up the below line:

#mirna_21 my_host my_user my_password

Thank you!

[ne1al]

@anishchakka were you able to resolve this issue?

[spazm5]

Has anyone figured this out? My PI wants to use this pipeline but I can't create a mirBase connection.