Release v1.0.5 (#53)

Author: lcoombe

bin/ntjoin_assemble.py

@@ -1010,7 +1010,7 @@ def parse_arguments():
                                        "increasing/decreasing to assign contig orientation [90]\n "
                                        "Note: Only used with --mkt is NOT specified", default=90, type=int)
         parser.add_argument('-t', help="Number of threads [1]", default=1, type=int)
-        parser.add_argument("-v", "--version", action='version', version='ntJoin v1.0.4')
+        parser.add_argument("-v", "--version", action='version', version='ntJoin v1.0.5')
         parser.add_argument("--agp", help="Output AGP file describing scaffolds", action="store_true")
         parser.add_argument("--no_cut", help="Do not cut input contigs, place in most representative path",
                             action="store_true")
@@ -1040,7 +1040,7 @@ def print_parameters(self):
 
     def main(self):
         "Run ntJoin graph stage"
-        print("Running ntJoin v1.0.4 ...\n")
+        print("Running ntJoin v1.0.5 ...\n")
         self.print_parameters()
 
         # Parse the weights of each input reference assembly

ntJoin

@@ -2,7 +2,7 @@
 
 # ntJoin: Scaffold assemblies using reference assemblies and minimizer graphs
 # Written by Lauren Coombe @lcoombe
-# ntJoin v1.0.4
+# ntJoin v1.0.5
 
 # Input files
 target=None
@@ -92,7 +92,7 @@ endif
 help:
 	@echo ""
 	@echo "ntJoin: Scaffolding assemblies using reference assemblies and minimizer graphs"
-	@echo "ntJoin v1.0.4"
+	@echo "ntJoin v1.0.5"
 	@echo "Usage: ntJoin assemble target=<target scaffolds> references='List of reference assemblies' reference_weights='List of weights per reference assembly'"
 	@echo ""
 	@echo "Options:"
@@ -152,7 +152,7 @@ ifeq ($(ref), None)
 endif
 
 version:
-	@echo "ntJoin v1.0.4"
+	@echo "ntJoin v1.0.5"
 	@echo "Written by Lauren Coombe ([email protected])"
 
 .PHONY: help all version analysis assemble check_params jupiter

setup.py

@@ -5,7 +5,7 @@
 
 setuptools.setup(
     name="ntJoin",
-    version="1.0.4",
+    version="1.0.5",
     author="Lauren Coombe",
     author_email="[email protected]",
     description="Genome assembly scaffolder using minimizer graphs",